Detail information of BGIOSGA003295_circ_g.1


General Information
CircRNA Name BGIOSGA003295_circ_g.1
ID in PlantcircBase osi_circ_009013
Alias Chr11:5370743_5375516(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 11320228-11325001  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA003295
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003293_circ_ag.1 BGIOSGA003293_circ_ag.2 BGIOSGA003294_circ_ag.1 BGIOSGA003294_circ_ag.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TA-AG
Number of exons covered BGIOSGA003295-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAAGTCATGTCATGGCATCAAGGACGACAACAATTGTGTTCTTCTGGATGGTTTATCAGAAG
CTAAGACTTTGGCATTGATTGATGGAACCATATCGGtttattttcaaaagggatttgaaatggt
gcccaacatttagcaagttaaagactttgatactcaatgggtactggtgtgtgcctgatgattc
tcacatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTATTTTCAAAAGGGATTTGAAATGGTGCCCAACATTTAGCAAGTTAAAGACTTTGATACTCA
ATGGGTACTGGTGTGTGCCTGATGATTCTCACATGCTAGCTCGCATTCTTGAACACTCGCCAGC
CCTAGAAAAACTCGTTTTCCAGCTTGGTTACCAGGTAGTATATTTTATTTAAATTGACAACTGT
TGCCTCGTAAAGTTATTACTTAGCATCACGCATTTTATATTTATCTTTGTGTAATGTTTTTTAT
TTGCTACAGGCATATAAACGTACAAATAAAATTAAAGGAATTCTCAATCCAATGGAGAGATCAG
CTGGAATATCAGAACACCTCCAGATAGTTGAAGTTCAATGCAATGCGATTGATGGTCAGGTTCT
TAAAGTTTTGAAGTACCTGTCAACATTTAAAATATGTAAGATCTTCATACCTTTTCTTTTACAG
TTTTGAGAATTTCCTTCACTGAATGCCACTCTGCTATTTAGGCTGTAACTCTGTTCTGAGGAGC
CACTGGATTATTTTTCTTGCCATGAACTGGTGCATTACTACTGCTAGCTGTCACTCCTAGAATG
TAACAAAATGCCATGTTAATTTGTGGTTTGAGTAGCTATGAACTTAAATAGAAGTCTGTTAGTG
CATTTCAGGTTTCCTTGGATGGCTATGAACTTAATTCTAATGCATGGCACTTTTCATATTGTGC
AGATTTCAGTTTGGAGGAAGCGACGATTGAGAGTTAGATGATCATGATGATGACGAAAAAGGCT
TGATGCACAAGTTCTTGACAATTAGAAGTTTGAGCTGGGAACTACGTTATCTTTCCTCTATGTG
TTTCTTAAAAGAACTTTAGCTTTGCCTTGTAATGGGCCGTTTACATTGTCTAGTGTCTACCTAG
AAATGGGTTTCTCATATGCGGATGGTTTGAAATTGATTGTAAAAGGACCTATTTCACCAAGTAG
TGCTAATTTATCCCTTTTAAGAATGGCTCCAGTGGCTACATTTATGCTGTTTTCCTCTCTGGAT
CATGCATGTTTTAGTTTGTTTGCTTTCTTTTTGGCTAGATTTCTTGACTGATCTAAGCTATATG
CATTGTGACTCAAATCAATAGCTGAGCTGCTATTAACATGTCAATAGCCTAGTTAGTTCGTTGC
ATGCCTAGTTATATTTGATGGATTGATCGTTCAGACAGTGGTGCTGCCCTAATCCACAAGGATG
ATAGCATTGTTTTTTTCTCTTCGAAGCCAAGAATAAGAGTATTTTCAGAAAAAAAAAGCATCCT
ATCCTTTCACATACCAAGGATCCATTTGATTTCTAGAAAAAACCAAGAAATTTTGGAGGTTTTT
ATTTTGGAAGGAAAATTTTTTCTATGAAGACCTTTGAAATAGAGAAAAGAATACTATCATATCC
TTTGAAATTTCTATGAAATGGATAGTTCTATAGAGATTTTGAAGAAAACTTAGCAAGAGCTCTA
ATTTCTTGAAAAAAAAATTTCGACTGTATCTCTCTTATCCGATTTTGTGTGTTTTCCTGCTAAT
CTAATCAAACGGTGTTTCATGAGTTTTTTTTTTACGTTTTATAATCCTCTATTTGTATTCTGTT
AGAATAATGTGTTTTTCACATTCCTTCTTTTTTTCACTCATGCGATTAAAACAACCCTAATTGT
GCTGGAATTCAGATTCTCTTTTTGAACATAAAAACAGGGTGGCCCACTTGTCAGGCTCCATCTC
CTCACTGCCCTTGCCCATCGTCTTCCTCCGATCCGGCGATTCCTCCGTTCATCCTCACACGTAC
TCCTGCCGCCGCGCCGTCGCCTCACGCGAAGCTGCCGACGGCGACCCGGAGAGGCCACTTCTGC
TTGTTTCCCCCCGGTATCTCCGCTCTTTGTGTCGCCTGAGCGGGTTCTTGGCTTCTTGCATCGC
AGTGGGGCGCGCCCACGCCCACGCCCACAACCTGTTCGACGGAATGCGTCAGCGAAAGAAGGCC
AAGAGAGCGCCTTGTTCTACCGGCGTCGACCGGATAGGGGCCCTCCCGGACGAGGTGCTCCACC
GCGTGCTCTCCTTCCTACTGGCGCCACCTCTGGAAGTCCGCCACGAGGCTGCGCATCGGCGGAG
ATCAACCCTGGGAAGCATCAAGGAACGCCGAAGGTTCATTGAGAATCTGCTGCTACTCCGTGAC
AGCGCGCCTCTCGGCACGTTCGTGCTAAGGTTCCGTGAGTGCGAGGGCATCGACGACATTGCCC
GGCTGAACCTCTGGTATCAGGCATGCTCTGCTCCGCAAGGTTCGGTTCCTCGAGCTCGGGAGTC
TGCCAGAATGATGTCAATTTTGACCCGGTTCCGATCGATGAGCTGCCTCTTGTCTCCCGGCACT
TGACAAGGCTACAACTTCACGGTACAAAAGCTAAACGACATCTTCCTCAACTTCTCGAGCTGTC
CAGCATTGGAGCATCTAGTGTTTGACTATTGTATACTTGAGTGTGCCAAGATCTCATCTAGCTC
CGTGAAGCTCTTGAGCATTACTGATTCCAATTTCAGTGAGACCTTGCGCGTGTGCATATCGATA
TCCCGAGCCTTGTTTCTCTGTGGTTGGATGACTTATGTGACTGGACACCAGTGCTTGAGAGGAT
GCCAGCATTAGTTGATGCATTCGTTAGGGTTCTCGACTATACTCAAGACTACTAAACGGTGTGT
TTTTTAAAAAGTTTTTCAACTCCTCCTTCTCGTGTTTGATAAAGGAGTTCCCAACTCCCCCTCT
CGTTTTCCGCGCACACGCTTGTCAAACTACTAAACGGTGTGTTTTTTTTTTAAAAAAGTTTATA
TACAAAAGTTGCTTAAAAAAATCATATTGATCCATTTTTTTTAAAAAAATAGCTAATACTTAAT
TAATCATACACTAATGGATCGCTCTTTTCCTTGCGTTGATGATAGGTTCCCAACAATCACCACT
GAACACAGCTATCGGTATGCTTTGCACTTCCTTCTGTAACTTGTTTATGTGATCTCATAATTCC
TCTGTGATCTCAGAATCGGACAATGCCAGCGTTGTTACTGATTTAAACGCGACAAGTGTCTAAA
GAGTATATTGGAGTGGCATAATCTCATAAGTTAAAGCGGCGATGCAGTGTTTGACACAGATGCA
GATGCACAAGATAACGAGATATTCTAACAAGATAGATCATTGCTTTAGCCCAAATGGTAATGGG
TTCAGGAATTGATGCGGAATGAAGATTATGTGCTCCTGCAGAAATTCTTGATCTCCTGAAGTCC
TGAACCAAGGATGTAATCCTTTGTATAGTCATTAATGAAATCTCTCTTTACCTTAAAAAAAATT
CCTCTGTGATCTTATTTCGCAAAAAAAAAAGGAGGGCCTCGTTTGGATAGGCTTTCATACAGGC
CCATGAACGTGTATGGGCCTAGGCCCATCCAAACAAGGCCGAAGTGAAGTGAAGGCCTATCGCC
TCCGTGAGACGTGGACACGTGTCACACGTCTCTCTCTCTCTCTCTTTAACCACCGCCTTCCTCC
TTTTCTCGGGGTCGTCGCGCCGCCGCCGCCGCGCTCCTCCCGATTCTTCCATTCCACGGTGATC
CCTCGCCTGGTTCTCCTCCATCCGCGCGATCCGATCGCCTCGAGCCCAGCGAGCGTCGCCGCCG
TTGGTAGCGGGCCGTGCTGCGTCTCCCTGCTGCTGCTGCTGTAACTCCGGCCGGTGGAGACGGT
GCCGGCGGCGAGGCGAGGCGAGGTGCTCTGTGGCTGTGCCCGCACTGGCGAGGCGTCCTCCGTG
TTTCAGCCTCTTCGGGCCATCCACGCCCCCTTCTTCAGTCGTCTGATCGGTTTCTGTTTCGCAG
AGCGCTAACGCCCGTGGCCTGTTCGACGAAATGCCTACGGGGAAGGAGGGGATGGAAGAGCCTT
TGCCGACCGACGCCGACCACATTGGGGCTCTCCCGGACACAGTGCTCCACCACGTTCTCTCCTT
CCTGCCGTCGCAGGATGCCGTGAGGACGTGCGTGCTCGCCAAGCGGTGGCTCGACCTCTGGAAG
TCTGTCACGGCATTGCGCATTGGTGACCGTGACAAGAGGAAGCTGTGGACCGTGAAGGGTCTCC
AGGGGTTCGTGGACCATTTTCTGCTGCTCCGTGAAAGTGTGCCTCTCCACACATGTGTGCTCAG
GTTCATCGTGTTCAGCGAAGACCTCAACGAGACATCCCGGCTAAACCTCTGGATTAAGCATGCT
CTGCTGCGTATGGTTCAGTTTCTCCAGGTCTCCATCCGGCAGAATACAGCCTTCTATCACCAGA
TTAATCTAGGCATCCTGCCTTTTGTTTCACGGCACTTGTCGATGCTTGAGCTTCACGGTGTACG
GATGGTGGGAAGTTTCCTTGATTTCTCCAGATGCCCGGCTTTGCAACATCTAGAATTTGACCGC
TGTGAGTTGCCATGTGACAAGATCTTATCAGAGTCCCTAAAACTTCTGCGCATCACTCGCTGCA
AATTCAGTCAAACATCACGGGTTCGTATTTGTGTCCCAAGTCTTGTTTCACTGCGGCTTGATGA
TTTTTATCGCCGTACTCCAGTGCTTGAGAGGATGCCATCATTAGTTGAGGCATTTGTCAGAGTT
GTCCACAGGACTTATGATTGTTGTGGGTATGATTATATTAACTCCGGTGATTGTGGTAATGAGC
ACTGTAAGTCATGTCATGGCATCAAGGACGACAACAATTGTGTTCTTCTGGATGGTTTATCAGA
AGCTAAGACTTTGGCATTGATTGATGGAACCATATCGG
Conservation Information
Conserved circRNAs osa_circ_008780
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021