Detail information of Os11g0202300_circ_ag.2


General Information
CircRNA Name Os11g0202300_circ_ag.2
ID in PlantcircBase osa_circ_008779
Alias NA
Organism Oryza sativa
Position chr11: 5170560-5174859  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0202300_circ_ag.1 Os11g0202300_circ_ag.3 Os11g0202450_circ_ag.1 Os11g0202600_circ_g.1 Os11g0202600_circ_g.2 Os11g0202600_circ_g.3 Os11g0202600_circ_g.4 Os11g0205500_circ_igg.1 Os11g0204600_circ_g.1 Os11g0204600_circ_g.2 Os11g0204600_circ_g.3 Os11g0204600_circ_g.4 Os11g0205500_circ_g.1
Support reads 3
Tissues shoot, seed
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGCATTTGATTTCAACTATCTCAAGGTGTGCTGATATTACAAGTGATCTATCCATTGAATG
GCAGTTTCCTTTGATTTTCATTCTATGTTTAGGTCCcttggaacagatctgaagaatgagattc
tctagaaccggtgcatgttgaagaatgcaagttagtgcactaaaatcatcgggcacacaccagt
attcattg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 376
Transcript exons: 5170560-5170722,5170839-5171051
CTTGGAACAGATCTGAAGAATGAGATTCTCTAGAACCGGTGCATGTTGAAGAATGCAAGTTAGT
GCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAATG
TTGGGCGCCATTTCAAATCCCTTTTCAAAATAAACCGATCCACGTTCACTTATCAGCCCCAACG
TCTTAGCTTCCGATAAACCTTCCAAAAGCACACAATTGTTGTCCTTGATACCGTAACAAGATTC
GCAGTTCTCATGACCACAATCCCCAGAGTCAGACCAAATGCAATAGTCTTTAGTCCAGTTGAGG
ACTCCAACAAATGCATCAACTAATGATGGCATCCTCTCAAGCACTGGAGCCCTGTC

Transcript length: 383
Transcript exons: 5170560-5170722,5170839-5171058
CTTGGAACAGATCTGAAGAATGAGATTCTCTAGAACCGGTGCATGTTGAAGAATGCAAGTTAGT
GCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAATG
TTGGGCGCCATTTCAAATCCCTTTTCAAAATAAACCGATCCACGTTCACTTATCAGCCCCAACG
TCTTAGCTTCCGATAAACCTTCCAAAAGCACACAATTGTTGTCCTTGATACCGTAACAAGATTC
GCAGTTCTCATGACCACAATCCCCAGAGTCAGACCAAATGCAATAGTCTTTAGTCCAGTTGAGG
ACTCCAACAAATGCATCAACTAATGATGGCATCCTCTCAAGCACTGGAGCCCTGTCATGGAAG

Genomic sequence CTTGGAACAGATCTGAAGAATGAGATTCTCTAGAACCGGTGCATGTTGAAGAATGCAAGTTAGT
GCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAATG
TTGGGCGCCATTTCAAATCCCTTTTCAAAATAAACTGCGCGGAGTGCAAAAAAGAAGATAAACA
AAAACCACAGAGTTCAAGTGGATATAAGCACATTAATATAAATAATGAGATAATACAAACAACT
TAAAGATGGAAGTGCAAGCATACCGATCCACGTTCACTTATCAGCCCCAACGTCTTAGCTTCCG
ATAAACCTTCCAAAAGCACACAATTGTTGTCCTTGATACCGTAACAAGATTCGCAGTTCTCATG
ACCACAATCCCCAGAGTCAGACCAAATGCAATAGTCTTTAGTCCAGTTGAGGACTCCAACAAAT
GCATCAACTAATGATGGCATCCTCTCAAGCACTGGAGCCCTGTCATGGAAGCCATCCAGCTGCA
GAGAAACAAGACTCGGGATAGCGATACGTACCCGAGATATCTCACTGAAATAGGAATTGGTTAT
GCTCAAACGTTTTGCAGAGCTAGATGAGATCTTGGCACAGCCAAATTTACATGACTGAAACACT
AGATGTTCCAATGCTGGACAGCTCGAGAAGTTAAGGAAGCTGTCGTTTACCCTTATATTTCGAA
GCTGTAGCCTCGTCAAGTGCTGGGAGACAAGTGGCATCTCATCTATCACAAATGAGTGGTAGTA
TCCGACGTCGAGCCAGAGGAACCGAGCCTTGTGGATAAGAGCATGCCTGAACCATAGGTTCACC
CGAGCTGTGTCCTCGATGTCCATGTCGCCGTAATAATCGAACATTAGCACGCACGTGTCGAGAG
GGGCTCCATCACGGAGTAGCAGCAGACGGTCGAGAAACTCCTTCTGTTTCTTCACGCTTCCCAG
ATAGTCGCAGTCCTCGCCAATGCGCAGCCCCGTGGCGGACTTCCAGAGGTGGAGCCATCGCCGA
GCCAGCAGGCACGTCCGGACAGCCTCCTGCGCCGGTAGGAAGGAGAGCACGTGGTGGAGCACCT
CATCCGGGAGGTCCCCTATGCGGTCTCCCCCGGTCGAGCCAGGCGATTCCTTGGGCATCTTCCG
CGGAGACATTCCGTCGAACAGGTTGCGGGCGTCGCCGCGGCGCCACCCCTCCCCTCCCAGCGTA
GCAAGAACAGCTCAGGTAACAGTAACACCAGGAGCGAGGGCTGTAAGGGTCAGGACCAAGCTGC
CCACATCGCCACCGGCAGCCTCCCCCCGGCCACCGGACACCGACCAGAGAGTGGAACGCGCGGC
GCCCGCGTTGCAAGGATACGGATACGCCAATGGCGCGGCGCGACGCTGGAGAGGAGAAGCGCGA
CACGAGCGCGGGAAGCGGACGGAGAGCTCTGGATCGGAGGGGAGGAAAGGGTGGGATGCTGTGC
TGGGTGGAGAAGACGGAGAGTTTGTAGTCAGTTTCTATCTCTACTGAGGTGAGTCATGACTGGG
GAGAGCCTGGGAGTCAGTTTGCTGTGCATATAGTTTTATTTTATTTTTTTGTTACTAGCATGAA
AATAAAGTTAGGACGCGGGAAAAAATATTACCGCATTATTAATTGAGTTTTCATTATTATAAAC
TTACAAATAAATTTATCTAATATTTTTAAGCAACTTATATAAAATAATTATTTCATATCAAGCT
TATAGCCTTAGGTTGCGTTCGGTAGTCCAATGCTGCCCTCCAGCACAGAAAACGGAGTGGTCCA
TTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTCAAAAAGAATCAATATGATTTTTTAAA
CAACTTTCGTACAGAAACTTTTTTTAAAAAAAGCGCACCGTTTAACAGTTTCAAAAGCGTACGC
ACGGAAATTGAGACAGGAGAGTTCCGAACCTGGACTAACGAACGCAGCTTAATAAGCCAAAATA
AGTTATTGGGAAATAAAAATTAGTTTCTAGATAAAACTTTTATATATTGGTTCATAGCGATTTA
AAGGGCAATGCTAAAAAGAAATTACGTTGAAATATCTTAAAATCAAGTTAAAAATTTAAATTTT
GGCTTTTGCTTTTACTTATTAGGCTAATTGATGGGGCTCTCAGTTTAGAGCTCATTTAAAATAT
ATTTCCTCTGTCCCTATATAAATGCACTCTAATACAGGATGTGACATATCATACTACTACGAAT
CTGAATATAACAGATAAAAATAAATTACAAGACAGATGATTACAAAATAAAAAAATATAAGAAT
AATCGTTTAGCAGGATAAGATACAAGATGGATGAGAGATAGACTTAAACTAAAATTCCAAAAAC
GTTAGAGCTCTTGGTAACTTTCCTCCAAAGTCTTTATATGATTGTACATTTCATAGAATTTCAA
AGTCTTCATAAATAAAACAAATTGATTTAACCATTTGTTTTAAAGGTCATTTCAGAATTTTTTC
TACAGAATTAAAATCCTTAAACTTTTTATGTTTTTCCTATGAATTAAAAAACCCTCGGAAGCAG
GGGCGGATCTACCCATTAAGCAGGGTAGGTCGACTGTCCCAGCTACGACTCGTGTTGCCCCACA
CCCTCAAACCCCCCCTAACCCCTTATAATAGTTGTGGACCATCAAAATTAGGTATAAGAAGGTG
TAAGCACTCAATAGATGTTCGTTTCTTCACAACATACGCACGCCGCAAACAATGATTGAGACAG
TTATATGCGATTGAACTATAAATACGATATGTGTTGTGTTTAATTGCTCTTATCGAGTGAACAT
CTCTTTTCTCCGCCCCATCTATATTTTGAAGTTGCGTCCACCACTGCTCGGAAGCCCAGGTAGT
GAGCACATGGAAGCTTAACCTTCTTAATAAATCAAAACAGTGGTGCATCAACCATTTTTCTCTT
CCTCTTCCTCTTACTCTTCATCTTCATCTTCATCTTCGTCTTCGTCTTCATCGTCATCGTCTTC
GTCTTCGTCTTCATTGTCTTCGTCTTCATGTTCGCCTTTGTAAGAGTCTTCATTTTCGTCTTCA
AAAGGGTTTTCATAAGAGTCCTCGTCTTCATCCTCATCTTCCTCCTCTTCATCCTGGTCATTTT
CATCTTCTTCCAAAATCTCGATTTCCTCAAAACTAAAAACTGCACAAAAACAAATAAGAAGAGC
ACAGTAAGTTTCAAGAGGTCTCACCTGAAACTTCACTTCAAAACAAAAACTTCAAATCCATTGA
CAAACTTAGTCCATTGGACCAATCCTTCAAAATCCAAATGGACATAAAGACTTCATTACTTCTT
CATGACTAAAATCTGATTGTATCCACTACATTTAAAGAAAAGAAACAAAATAAAATGCCCTCAC
TTGAACAAGCATTGGTCCTTTACAACATGGTTGCATCCTATAATGCATAGTAGTTGGATTCTCT
ACAACCTAGCACACGGCAAGAGAGAAAATTGCATGGTCTAGGGACTATGTGAGTACCCATGGCA
ATTTGTAAACAAGATTTTTGGACACCAGGCTATAATCACCAGGCGTTGTGAGCTCAACATAACA
AATATAATCTAGTGTGACAAAAAAAAATTACCTTAGCCAAACAACACAACTAAGCAATCTTGCC
CAATTATTAATTACTAGCTGCTATGATACAACCTGGATGACTAGTGCAGCAAACTTGCATACAG
CACCTCTGGTAATGGTAAACTGATTATCATAGCAGAACAAAGTCTGTGAGGTACTTGCATACAT
GGCAAATGGCATGCGAGCTATAAGAGCAACTAATAAACTGGAATTCAAGATGGCAACTGATGGG
AAAGAAAATCAAATAAAATTATTGAAAGATATAATTACACACATACTGGCATACATGTTATCAT
ACCGGTTACGCGATGCAAGAAAATTTTAGAAATCAGAATGGTTTTTTCGAATACTACTAGCCAA
AAGAGTAGAATAGATAACGTCTTCCCAATTGTACCAAATGGAGTGCATGCTTTCATTTCTCAAT
TAATCCATGTTCCTAGCATCAATTTCCAAAGAACTTCAATACAGCTTGCTATATTTCATGCATA
TGAAGGTAAAGGAAAATTTTAGAAATATACAAAGAATGAAGAATGTTTACGTATGTTAAAAGTA
GACAGAAACTTCAAAACTTTGAGTACTCTCTTATCAACCGTTTTGCATTTGATTTCAACTATCT
CAAGGTGTGCTGATATTACAAGTGATCTATCCATTGAATGGCAGTTTCCTTTGATTTTCATTCT
ATGTTTAGGTCC
Conservation Information
Conserved circRNAs osi_circ_009010
PMCS 0.896071639
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017