Detail information of Os11g0205500_circ_igg.1


General Information
CircRNA Name Os11g0205500_circ_igg.1
ID in PlantcircBase osa_circ_008784
Alias Os_ciR1853
Organism Oryza sativa
Position chr11: 5252689-5325287  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0202300_circ_ag.1 Os11g0202300_circ_ag.2 Os11g0202300_circ_ag.3 Os11g0202450_circ_ag.1 Os11g0202600_circ_g.1 Os11g0202600_circ_g.2 Os11g0202600_circ_g.3 Os11g0202600_circ_g.4 Os11g0204600_circ_g.1 Os11g0204600_circ_g.2 Os11g0204600_circ_g.3 Os11g0204600_circ_g.4 Os11g0205500_circ_g.1
Support reads 6
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATAAACTTCAATGGCGTCATCAACATCATCCTCAAAAAGATATCCAGATGGTGGGTGCAAAA
TTGTACTTGCATTGCCCTCACAAGTGGTGCAAAGACcaaaacatgtgctaacttgaacagggca
gcagatggtctttgagtttgattcattgaatcgaccaggttgcgagtcccagaattgagcgaag
aagagtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.683355112
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919 osa-miR5809
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015