Detail information of BGIOSGA003293_circ_ag.1


General Information
CircRNA Name BGIOSGA003293_circ_ag.1
ID in PlantcircBase osi_circ_009009
Alias Chr11:5316208_5320474(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 11310569-11314836  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003293_circ_ag.2 BGIOSGA003294_circ_ag.1 BGIOSGA003294_circ_ag.2 BGIOSGA003295_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTGCGAATCTTGTTACGGTATCAAGGACAACAATTGTGTGCTTTTGGAAGGTTTATCGGAAG
CTAAGACGTTGGGGCTGATAAGTGAACGTGGATCGGtttattttgaaaagggatttgaaatggt
gcccaacatttaccaagctaaagactttgttactcaatgaatactggtgtgtgcccgatgattt
tagtgcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTATTTTGAAAAGGGATTTGAAATGGTGCCCAACATTTACCAAGCTAAAGACTTTGTTACTCA
ATGAATACTGGTGTGTGCCCGATGATTTTAGTGCACTAAGTTGCATTCTTCAACATGCACCGGT
TCTGGGGAATCTCATTCTTCAGATCTATTCCAAGGTATACCTTCTCTAATTGGCCAATTGATTA
CTTGTTGAAGTTTTGGGGGCGTTTTTCTATTGACCTTAAAATGTTTAATTTCTGACAGGGACCT
AAACATAGAATGAAAATCAAAGGAAACTGCCATTCAATGGATAGATCACTTGTAATATCAGCAC
ACCTTGAGATAGTTGAAATCAAATGCAAAACGGTTGATAAGAGAGTACTCAAAGTTTTGAAGTT
TCTGTCTACTTTTAACATACGTAAACATTCTTCATTCTTTGTATATTTCTAAAATTTTCCTTTA
CCTTAATATGCATGATATATAGCATGCTGTATTTAAGTTCTTTGGAGATGGATGCTAGGAACAT
GGATTAATTGAGAAATGAAAGCATGCACTCCATTGGGTACTATTGGGAAGACGTTATCTATTCT
ACTCTTTTGGCTAGTAGTATTCGAAAAAACCATTCTGATTTCTAAAATTTTCTTGCATCGCGTA
ACCGGTATGATAACATGTATGCCAGTATGTGTGTAATTATATCTTTCAATAATTTTATTTGATT
TTCTTTCCCATCAGTTGCCATCTTGAATTCCAGTTTATTAGTTGCTCTTATAGCTCGCATGCCA
TTTGCCATGTATGCAAGTACCTCACAGACTTTGTTCTGCTATGATAATCAGTTTACCATTACCA
GAGGTGCTGTATGCAAGTTTGCTGCACTAGTCATCCAGGTTGTATCATAGCAGCTAGTAATTAA
TAATTGGGCAAGATTGCTTAGTTGTGTTGTTTGGCTAAGGTAATTTTTTTTTTGTCACACTAGA
TTATATTTGTTATGTTGAGCTCACAACGCCTGGTGATTATAGCCTGGTGTCCAAAAATCTTGTT
TACAAATTGCCATGGGTACTCACATAGTCCCTAGACCATGCAATTTTCTCTCTTGCCGTGTGCT
AGGTTGTAGAGAATCCAACTACTATGCATTATAGGATGCAACCATGTTGTAAAGGACCAATGCT
TGTTCAAGTGAGGGCATTTTATTTTGTTTCTTTTCTTTAAATGTAGTGGATACAATCAGATTTT
AGTCATGAAGAAGTAATGAAGTCTTTATGTCCATTTGGATTTTGAAGGATTGGTCCAATGGACT
AAGTTTGTCAATGGATTTGAAGTTTTTGTTTTGAAGTGAAGTTTCAGGTGAGACCTCTTGAAAC
TTACTGTGCTCTTCTTATTTGTTTTTGTGCAGTTTTTAGTTTTGAGGAAATCGAGATTTTGGAA
GAAGATGAAAATGACCAGGATGAAGAGGAGGAAGATGAGGATGAAGACGAGGACTCTTATGAAA
ACCCTTTTGAAGACGAAAATGAAGACTCTTACAAAGGCGAACATGAAGACGAAGACAATGAAGA
CGAAGACGAAGACGATGACGATGAAGACGAAGACGAAGACGAAGATGAAGAGTAAGAGGAAGAG
GAAGAGAAAAATGGTTGATGCACCACTGTTTTGATTTATTAAGAAGGTTAAGCTTCCATGTGCT
CACTACCTGGGCTTCCGAGCAGTGGTGGACGCAACTTCAAAATATAGATGTGGCGGAGAAAAGA
GATGTTCACTCGATAAGAGCAATTAAACACAACACATATCGTATTTATAGTTCAATCGCATATA
ACTGTCTCAATCATTGTTTGCGGCGTGCGTATGTTGTGAAGAAACGAACATCTATTGAGTGCTT
ACACCTTCTTATACCTAATTTTGATGGTCCACAACTATTATAAGGGGTTAGGGGGGGTTTGAGG
GTGTGGGGCAATACGAGTCGTAGCTGGGACAGTCGACCTACCCTGCTTAATGGGTAGATCCGCC
CCTGCTTCCGAGGGTTTTTTAATTCATAGGAAAAACATAAAAAGTTTAAGGATTTTAATTCTGT
AGAAAAAATTCTGAAATGACCTTTAAAACAAATGGTTAAATCAATTTGTTTTATTTATGAAGAC
TTTGAAATTCTATGAAATGTACAATCATATAAAGACTTTGGAGGAAAGTTACCAAGAGCTCTAA
CGTTTTTGGAATTTTAGTTTAAGTCTATCTCTCATCCATCTTGTATCTTATCCTGCTAAACGAT
TATTCTTATATTTTTTTTATTTTGTAATCATCTGTCTTGTAATTTATTTTTATCTGTTATATTC
AGATTCGTAGTAGTATGATATGTCACATCCTGTATTAGAGTGCATTTATATAGGGACAGAGGAA
ATATATTTTAAATGAGCTCTAAACTGAGAGCCCCATCAATTAGCCTAATAAGTAAAAGCAAAAG
CCAAAATTTAAATTTTTAACTTGATTTTAAGATATTTCAACGTAATTTCTTTTTAGCATTGCCC
TTTAAATCGCTATGAACCAATATATAAAAGTTTTATCTAGAAACTAATTTTTATTTCCCAATAA
CTTATTTTGGCTTATTAAGCTGCGTTCGTTAGTCCAGGTTCGGAACTCTCCTGTCTCGATTTCC
GTGCGTACGCTTTTGAAACTGTTAAACGGTGCGCTTTTTTTAAAAAAAGTTTCTGTACGAAAGT
TGTTTAAAAAATCATATTGATTCTTTTTGAAAAAAATTAGCTAATACTTAATTAATCACGCGCT
AATGGACCACTCCGTTTTCTGTGCTGGAGGGCAGCATTGGACTACCGAACACAACCTAAGGCTA
TAAGCTTGATATGAAATAATTATTTTATATAAGTTGCTTAAAAATATTAGATAAATTTATTTGT
AAGTTTATAATAATGAAAACTCAATTAATAATGCGGTAATATTTTTTCCCGCGTCCTAACTTTA
TTTTCATGCTAGTAACAAAAAAATAAAATAAAACTATATGCACAGCAAACTGACTCCCAGGCTC
TCCCCAGTCATGACTCACCTCAGTAGAGATAGAAACTGACTACAAACTCTCCGTCTTCTCCACC
CAGCACAGCATCCCACCCTTTCCTCCCCTCCGATCCAGAGCTCTCCGTCCGCTTCCCGCGCTCG
TGTCGCGCTTCTCCTCTCCAGCGTCGCGCCGCGCCATTGGCGTATCCGTATCCTTGCAACGCGG
GCGCCGCGCGTTCCACTCTCTGGTCGGTCTCCGGTGGCCGGGGGGAGGCTGCCGGTGGCGATGT
GGGCAGCTTGGTCCTGACCCTTACAGCCCTCGCTCCTGGTGTTACTGTTACCTGAGCTGTTCTT
GCTACGCTGGGAGGGGAGGGGTGGCGCCGCGGCGACGCCCGCAACCTGTTCGACGGAATGTCTC
CGCGGAAGATGCCCAAGGAATCGCCTGGCTCGACCGGGGGAGACCGCATAGGGGACCTCCCGGA
TGAGGTGCTCCACCACGTGCTCTCCTTCCTACCGGCGCAGGAGGCTGTCCGGACGTGCCTGCTG
GCTCGGCGATGGCTCCACCTCTGGAAGTCCGCCACGGGGCTGCGCATTGGCGAGGACTGCGACT
ATCTGGGAAGCGTGAAGACACAGAAGGAGTTTCTCGACCGTCTGCTGCTACTCCGTGATGGAGC
CCCTCTCGACACGTGCGTGCTAATGTTCGATTATTACGGCGACATGGACATCGAGGACACAGCT
CGGGTGAACCTATGGTTCAGGCATGCTCTTATCCACAAGGCTCGGTTCCTCTGGCTCGACGTCG
GATACTACCACTCATTTGTGATAGATGAGATGCCACTTGTCTCCCAGCACTTGACGAGGCTACA
GCTTCGAAATATAAGGGTAAACGACAGCTTCCTTAACTTCTCGAGCTGTCCAGCATTGGAACAT
CTAGTGTTTCAGTCATGTAAATTTGGCTGTGCCAAGATCTCATCTAGATCTGCAAAACGTTTGA
GCATAACCAATTCCTATTTCAGTGAGATATCTCGGGTACGTATCGCTATCCCGAGTCTTGTTTC
TCTGCAGCTGGATGGCTTCCATGACAGGGCTCCAGTGCTTGAGAGGATGCCATCATTAGTTGAT
GCATTTGTTGGAGTCCTCAACTGGACTAAAGACTATTGCATTTGGTCTGACTCTGGGGATTGTG
GTCATGAGAACTGCGAATCTTGTTACGGTATCAAGGACAACAATTGTGTGCTTTTGGAAGGTTT
ATCGGAAGCTAAGACGTTGGGGCTGATAAGTGAACGTGGATCGG
Conservation Information
Conserved circRNAs osa_circ_008780
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021