Detail information of Os03g0212600_circ_g.4


General Information
CircRNA Name Os03g0212600_circ_g.4
ID in PlantcircBase osa_circ_018490
Alias Os_ciR9106
Organism Oryza sativa
Position chr3: 5867734-5868763  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0212600
Parent gene annotation Targeting for Xklp2 family protein. (Os03t0212600-01)
Parent gene strand +
Alternative splicing Os03g0212600_circ_igg.1 Os03g0212600_circ_g.1 Os03g0212600_circ_g.2 Os03g0212600_circ_g.3 Os03g0212600_circ_g.5 Os03g0212600_circ_g.6
Support reads 2/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0212600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTCAGTTCTATCTCTGGTTTGTTCTCCAAAAGATCTGCAAAACCAGCAACAGTTCCAAAGGA
ACCAAAATTTCATCCTCGGCCGGAAAAACAGTCATGcaacggggaagggtgaaggaacaacagt
ttattcaaaaagtacaagaaatgcttatggaggaagagcagcaacgtatacatattgcacaagg
acttccat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 440
Transcript exons: 5867734-5867853,5868124-5868222,5868327-5868481,5868698-
5868763
CAACGGGGAAGGGTGAAGGAACAACAGTTTATTCAAAAAGTACAAGAAATGCTTATGGAGGAAG
AGCAGCAACGTATACATATTGCACAAGGACTTCCATGGACAACAGATGAACCTGAGTGCTTGAT
AAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACAGTGATGTACGAGCA
ATTGAACGTGCAGAATTTGATCAATATGTGTCAGAAAGGAACAAGTTCGCTGAGCAACTAAGGC
TGGAGAGGGAGCGGCAGCAGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCT
GGTTCCTAAAGCTCAGCCAATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAGATCTGCAAAA
CCAGCAACAGTTCCAAAGGAACCAAAATTTCATCCTCGGCCGGAAAAACAGTCATG

Genomic sequence CAACGGGGAAGGGTGAAGGAACAACAGTTTATTCAAAAAGTACAAGAAATGCTTATGGAGGAAG
AGCAGCAACGTATACATATTGCACAAGGACTTCCATGGACAACAGATGAACCTGAGGTATGTCT
AGACTAGAGCATTCTTGTTTTCTCTTCAAAGCAAGGCTTTCATTACCAGTTTGTTCAAAAAGCA
AAGTGAGTTGGCTTAAAATTTGTTGTTTGCGCTTGTTTGTCCTGGCTGTTCTCATTGCAGCTAG
GTTAGTTAACATATCAAAATAGTCAGGATTGAGTATATTTGCACAGCTTTTTACCTATTTTTCT
TTGAAATCAGTATGATGAATAATTTTACCTATTTTCTATGGTATCCTGACTCTGCGTTTTTATT
CTGCAGTGCTTGATAAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACA
GTGATGTACGAGCAATTGAACGTGCAGAATTTGATCAATATGTGAGCATCGCACCACAAACTCA
TTATATGTCTTGTGTATTATATTTAAGTAAACCACAACGTTACTTATTGCATATACTTGGTATG
CTTGGTTGAGAATGCAGGTGTCAGAAAGGAACAAGTTCGCTGAGCAACTAAGGCTGGAGAGGGA
GCGGCAGCAGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAA
GCTCAGCCAATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAGGTGAATATCCAGTTTATAAG
TGAAACTTAGCCTGCCAAATTTCTTTTTGTAGCACTTTCACTCTCGTCTGTTGCTTGGAAATAA
TGATTCAGTATTGTCATTTCTTTCTAAAGAAATCAATGCTGTATATTTACTTTGCAGTAGCACA
CCAGCATTATCTTACCATTTGCACAAGTTACTAATACTCAGTTCTATCTCTGGTTTGTTCTCCA
AAAGATCTGCAAAACCAGCAACAGTTCCAAAGGAACCAAAATTTCATCCTCGGCCGGAAAAACA
GTCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.224448479
Functional Information
Coding potential Y
Potential coding position 5867783-5867746(+)
5868762-5867746(+)
5867816-5868739(-)
Potential amino acid sequence MLMEEEQQRIHIAQGLPWTTDEPECLIKPPVKETTEPVDLVLHSDVRAIERAEFDQYVSERNKF
AEQLRLERERQQKLEEEEMIKQLRKELVPKAQPMPYFDRPFIPKRSAKPATVPKEPKFHPRPEK
QSCNGEG*(+)
MQRGRVKEQQFIQKVQEMLMEEEQQRIHIAQGLPWTTDEPECLIKPPVKETTEPVDLVLHSDVR
AIERAEFDQYVSERNKFAEQLRLERERQQKLEEEEMIKQLRKELVPKAQPMPYFDRPFIPKRSA
KPATVPKEPKFHPRPEKQSCNGEG*(+)
MYTLLLFLHKHFLYFLNKLLFLHPSPLHDCFSGRG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017