Detail information of Os03g0212600_circ_igg.1


General Information
CircRNA Name Os03g0212600_circ_igg.1
ID in PlantcircBase osa_circ_018486
Alias Os_ciR4774
Organism Oryza sativa
Position chr3: 5865060-5868481  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0212600_circ_g.1 Os03g0212600_circ_g.2 Os03g0212600_circ_g.3 Os03g0212600_circ_g.4 Os03g0212600_circ_g.5 Os03g0212600_circ_g.6
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAGCC
AATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAGcaaaagaaaatccaccacctcactcatc
acgcacgcgaggcccaaaccctagacatggcgacgtcgacggcgacggcgaggactccgaccaa
ggcggcgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 137
Transcript exons: 5865060-5865126,5868412-5868481
CAAAAGAAAATCCACCACCTCACTCATCACGCACGCGAGGCCCAAACCCTAGACATGGCGACGT
CGAAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAGCCAATGCCGTACTTTGATCGGCCGTTCAT
TCCAAAAAG

Genomic sequence CAAAAGAAAATCCACCACCTCACTCATCACGCACGCGAGGCCCAAACCCTAGACATGGCGACGT
CGACGGCGACGGCGAGGACTCCGACCAAGGCGGCGGCGGCGGCGGCGGGGGGGAGGGCGGCCGG
GAACACCACCCCGTCCTCCAAGCCCGCCTCACGCGCGCGGCTCTCGCACGCCTCCTCGGAGAAC
GCGCACCCCAACATCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGAGGCCGGGACCCCGT
CCAAGAACCCCACCCTGGCGCGGCTCTCGCACGCCTCGTCGGAGAACGCGCACCCCAACATCCT
GGGGTCCCCCCCGCCGTCGAAGCCCGCGAAGTCGCCGACCACCGCGTCCAAGTCTGCCTCCGCC
TCCGCCTCCGCCAGGAAGAAGATCTCCACGCCGGCGCCGCCGCCGCCGCCGCGGGAGAGGCGGT
TCCTCGTGGCGAAGAAGAGGGCGCGGCGGAGGCGCAACGGCGCCAATGGAGGCGGCGGCGGTGG
CGGAGGAGGCGACTTCGACTTCGACAAGTGCAGGGAGGCCGCCCGCGAGGCCCTGCGCACGTCT
CACGAGGAGTTCTTCCGCAAGGAGCGCGCCGCATCGGCCGCAGCAGCAGAGGAGCAGTTGCAAA
AGGAGGAGGAGGAGGAGAAGGCGGCCGCGCAAGAAGCCAAGAAAGGAGCATTGGAGACATTGGA
GGAGGAAGATGTAGCGGAACTGGAAGGGAGCAGCAAAGTGAGGGCGCTGAGGACCAAAGTGATG
ACCAAGGCGTTGAGCAGCGTCCCTGATTCTGGCGCTGGTCGTGTCAAGCACCTTGTGCAGGCCT
TCGAGAGCATCCTCTCCATCTCTGGAGCCACCTCTGACGCCGACAGGGCCGGTGAGGGGTCCTG
GGCGCTCCCCGGGTTACAGGCATGGAAGGAAGATTGCGAGGGTAAGATAGGGATGCCGCCGGTG
TCGGTGTCCTCTTCTGCTGAGTTCTTGAATGCAGGACCGAACAGGCTCTGTTCTTCACTTGATG
GGAAAAGCGACAGGTTGGTCAATTTGAACAAGTGGGGGATATGGATTGTGTTTTGGTTGCTGCC
AATGCAATAGTTTGATCAACAATTCTGTATCTTTTCAGGTTGAGTTGGGACAGCCGGACATCGG
CAGGGGGGTGCAGGAGCAGGCGAAATGTGAGGACATACGATGAATTTTGTTTCCTTTTGGGAGT
TAATTATGTTTCATATTTGGCCTCTGATGTGAACGTATATTATTCTTTGATTGTCAGACATCGG
AGTCGCTAAGAAGCAGTTGGAACAAGAAACTGAAGGTCACAAGCCAGCATCCGTTCAAGCTGAG
AACCGAGGTAAACGATATGTTTGATGCAGTGTGAATCGTTGTTGTAAATCTATTGTGTCATTAG
GCCGTTTAGGATAGGAGAAGTGCACAAAAGTTTTAGGGCCCCTTTAAATCGCAGGGTAGAAAAA
ATGGAGGAATAGGAAAAACACAGGATTCTGACAGGAATTGAAGTGTAAAACAGAGGATTGCAAA
ATACAGGAAAAACACAGGAATGATCGTTTGATTGGAGCGTAGGAAAAACGCAGGAATCGGATGA
GAGAGATAGACTCAAAGGAAATTTTCCAAGAGGTTGGAGCTCTTGCTAAATTTCCTCCAAAATC
CACATGCAATGTGCCATTCCATAGGAATTTCATAGGAATTGGAAAGCTTCAATCCTTTGAATCA
AAGGGCCAAATAAAATTCCCATTTGAATCAAAGGATTTATGTAGGAATTTCATAGGATTCAAAT
CCTATAGGAAATTTTCCTATTTGGCCCTTTGATTCAAAGGATTGAAGCTTTCCAATTCCTATGA
AATTCCTATGGAATGGCACATTGCATGTGGATTTTGGAGGAAATTTAGCAAGAGCTCCAACCTC
TTGGAAAATTTCCTTTGAGTCTATCTCTCTCATCCGATTCCTGCGTTTTTCCTGCGCTCCAATC
AAACGACTATTCCTATGTTTTTCCTGTGTTTTGCAATCCTCTGTTTTACACTTCAAATCCTGTC
AGAATCCTGTGTTTTTCCTATTCCTCCGTTTTTTCTACCCTGCGATTCAAAGGGGCCCTATGGG
TTAATTTGATACTACAGTGACAACAACAGCACAATCGACCTATACCTGGCTTCGTGTCAATTTT
GAAGTGTTTATTAAGTCCATTACCAGCCAGTGTTACTGTTCTTCAAACTGAAATGCGCCATCAA
GTGACAATGGGTAGAATGGTAGCATAAAAGTATACTTTTTATTATGAAGCGTTTCAATGAGTTG
GTTGTATGTGTTTATAAGGATAAACATGGCAACATACATCTGATGCTTATGGAAAGATTATTAG
ATATCTGAAATATTCTTAGCCCAAGATTTACAGTACTTGAGTGAAATGTGTCGTGCCATACTAT
TCTTTAGTGTTTCTCTTTGACATGCCAATTGCTAGTACCATGTTGATACATCCAATGCAACAAC
ATTTGGTTCAATCTCTGATTTACTTTGCTTCTCGTTGGATTTTGCAAATACAATTTGCTCAGTG
CATTGCTCTGTATTTTCTACAGATTATGATTCTTTTGATGACAATCTCTAGCTGTTCCCTCAAA
TAAACTAGTGCATCAAAATCAATCACTCCTTTTTTTCTTTTTTGCAACAGCAACGGGGAAGGGT
GAAGGAACAACAGTTTATTCAAAAAGTACAAGAAATGCTTATGGAGGAAGAGCAGCAACGTATA
CATATTGCACAAGGACTTCCATGGACAACAGATGAACCTGAGGTATGTCTAGACTAGAGCATTC
TTGTTTTCTCTTCAAAGCAAGGCTTTCATTACCAGTTTGTTCAAAAAGCAAAGTGAGTTGGCTT
AAAATTTGTTGTTTGCGCTTGTTTGTCCTGGCTGTTCTCATTGCAGCTAGGTTAGTTAACATAT
CAAAATAGTCAGGATTGAGTATATTTGCACAGCTTTTTACCTATTTTTCTTTGAAATCAGTATG
ATGAATAATTTTACCTATTTTCTATGGTATCCTGACTCTGCGTTTTTATTCTGCAGTGCTTGAT
AAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACAGTGATGTACGAGCA
ATTGAACGTGCAGAATTTGATCAATATGTGAGCATCGCACCACAAACTCATTATATGTCTTGTG
TATTATATTTAAGTAAACCACAACGTTACTTATTGCATATACTTGGTATGCTTGGTTGAGAATG
CAGGTGTCAGAAAGGAACAAGTTCGCTGAGCAACTAAGGCTGGAGAGGGAGCGGCAGCAGAAGC
TGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAGCCAATGCC
GTACTTTGATCGGCCGTTCATTCCAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.314668619
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015