Detail information of Os03g0212600_circ_g.5


General Information
CircRNA Name Os03g0212600_circ_g.5
ID in PlantcircBase osa_circ_018491
Alias Os_ciR9107
Organism Oryza sativa
Position chr3: 5868124-5868481  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0212600
Parent gene annotation Targeting for Xklp2 family protein. (Os03t0212600-01)
Parent gene strand +
Alternative splicing Os03g0212600_circ_igg.1 Os03g0212600_circ_g.1 Os03g0212600_circ_g.2 Os03g0212600_circ_g.3 Os03g0212600_circ_g.4 Os03g0212600_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0212600-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAGCC
AATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAGtgcttgataaagccaccagtcaaagaaa
ccaccgagcctgttgaccttgttctgcacagtgatgtacgagcaattgaacgtgcagaatttga
tcaatatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 254
Transcript exons: 5868124-5868222,5868327-5868481
TGCTTGATAAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACAGTGATG
TACGAGCAATTGAACGTGCAGAATTTGATCAATATGTGTCAGAAAGGAACAAGTTCGCTGAGCA
ACTAAGGCTGGAGAGGGAGCGGCAGCAGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGG
AAAGAGCTGGTTCCTAAAGCTCAGCCAATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAG

Genomic sequence TGCTTGATAAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACAGTGATG
TACGAGCAATTGAACGTGCAGAATTTGATCAATATGTGAGCATCGCACCACAAACTCATTATAT
GTCTTGTGTATTATATTTAAGTAAACCACAACGTTACTTATTGCATATACTTGGTATGCTTGGT
TGAGAATGCAGGTGTCAGAAAGGAACAAGTTCGCTGAGCAACTAAGGCTGGAGAGGGAGCGGCA
GCAGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAG
CCAATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.239114572
Functional Information
Coding potential Y
Potential coding position 5868403-5868127(+)
Potential amino acid sequence MIKQLRKELVPKAQPMPYFDRPFIPKSA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015