Detail information of Os03g0212600_circ_g.2


General Information
CircRNA Name Os03g0212600_circ_g.2
ID in PlantcircBase osa_circ_018488
Alias NA
Organism Oryza sativa
Position chr3: 5866411-5867699  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0212600
Parent gene annotation Targeting for Xklp2 family protein. (Os03t0212600-01)
Parent gene strand +
Alternative splicing Os03g0212600_circ_igg.1 Os03g0212600_circ_g.1 Os03g0212600_circ_g.3 Os03g0212600_circ_g.4 Os03g0212600_circ_g.5 Os03g0212600_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAATACAATTTGCTCAGTGCATTGCTCTGTATTTTCTACAGATTATGATTCTTTTGATGACAA
TCTCTAGCTGTTCCCTCAAATAAACTAGTGCATCAAgtaaacgatatgtttgatgcagtgtgaa
tcgttgttgtaaatctattgtgtcattaggccgtttaggataggagaagtgcacaaaagtttta
gggcccct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1289
Transcript exons: 5866411-5867699
GTAAACGATATGTTTGATGCAGTGTGAATCGTTGTTGTAAATCTATTGTGTCATTAGGCCGTTT
AGGATAGGAGAAGTGCACAAAAGTTTTAGGGCCCCTTTAAATCGCAGGGTAGAAAAAATGGAGG
AATAGGAAAAACACAGGATTCTGACAGGAATTGAAGTGTAAAACAGAGGATTGCAAAATACAGG
AAAAACACAGGAATGATCGTTTGATTGGAGCGTAGGAAAAACGCAGGAATCGGATGAGAGAGAT
AGACTCAAAGGAAATTTTCCAAGAGGTTGGAGCTCTTGCTAAATTTCCTCCAAAATCCACATGC
AATGTGCCATTCCATAGGAATTTCATAGGAATTGGAAAGCTTCAATCCTTTGAATCAAAGGGCC
AAATAAAATTCCCATTTGAATCAAAGGATTTATGTAGGAATTTCATAGGATTCAAATCCTATAG
GAAATTTTCCTATTTGGCCCTTTGATTCAAAGGATTGAAGCTTTCCAATTCCTATGAAATTCCT
ATGGAATGGCACATTGCATGTGGATTTTGGAGGAAATTTAGCAAGAGCTCCAACCTCTTGGAAA
ATTTCCTTTGAGTCTATCTCTCTCATCCGATTCCTGCGTTTTTCCTGCGCTCCAATCAAACGAC
TATTCCTATGTTTTTCCTGTGTTTTGCAATCCTCTGTTTTACACTTCAAATCCTGTCAGAATCC
TGTGTTTTTCCTATTCCTCCGTTTTTTCTACCCTGCGATTCAAAGGGGCCCTATGGGTTAATTT
GATACTACAGTGACAACAACAGCACAATCGACCTATACCTGGCTTCGTGTCAATTTTGAAGTGT
TTATTAAGTCCATTACCAGCCAGTGTTACTGTTCTTCAAACTGAAATGCGCCATCAAGTGACAA
TGGGTAGAATGGTAGCATAAAAGTATACTTTTTATTATGAAGCGTTTCAATGAGTTGGTTGTAT
GTGTTTATAAGGATAAACATGGCAACATACATCTGATGCTTATGGAAAGATTATTAGATATCTG
AAATATTCTTAGCCCAAGATTTACAGTACTTGAGTGAAATGTGTCGTGCCATACTATTCTTTAG
TGTTTCTCTTTGACATGCCAATTGCTAGTACCATGTTGATACATCCAATGCAACAACATTTGGT
TCAATCTCTGATTTACTTTGCTTCTCGTTGGATTTTGCAAATACAATTTGCTCAGTGCATTGCT
CTGTATTTTCTACAGATTATGATTCTTTTGATGACAATCTCTAGCTGTTCCCTCAAATAAACTA
GTGCATCAA

Genomic sequence GTAAACGATATGTTTGATGCAGTGTGAATCGTTGTTGTAAATCTATTGTGTCATTAGGCCGTTT
AGGATAGGAGAAGTGCACAAAAGTTTTAGGGCCCCTTTAAATCGCAGGGTAGAAAAAATGGAGG
AATAGGAAAAACACAGGATTCTGACAGGAATTGAAGTGTAAAACAGAGGATTGCAAAATACAGG
AAAAACACAGGAATGATCGTTTGATTGGAGCGTAGGAAAAACGCAGGAATCGGATGAGAGAGAT
AGACTCAAAGGAAATTTTCCAAGAGGTTGGAGCTCTTGCTAAATTTCCTCCAAAATCCACATGC
AATGTGCCATTCCATAGGAATTTCATAGGAATTGGAAAGCTTCAATCCTTTGAATCAAAGGGCC
AAATAAAATTCCCATTTGAATCAAAGGATTTATGTAGGAATTTCATAGGATTCAAATCCTATAG
GAAATTTTCCTATTTGGCCCTTTGATTCAAAGGATTGAAGCTTTCCAATTCCTATGAAATTCCT
ATGGAATGGCACATTGCATGTGGATTTTGGAGGAAATTTAGCAAGAGCTCCAACCTCTTGGAAA
ATTTCCTTTGAGTCTATCTCTCTCATCCGATTCCTGCGTTTTTCCTGCGCTCCAATCAAACGAC
TATTCCTATGTTTTTCCTGTGTTTTGCAATCCTCTGTTTTACACTTCAAATCCTGTCAGAATCC
TGTGTTTTTCCTATTCCTCCGTTTTTTCTACCCTGCGATTCAAAGGGGCCCTATGGGTTAATTT
GATACTACAGTGACAACAACAGCACAATCGACCTATACCTGGCTTCGTGTCAATTTTGAAGTGT
TTATTAAGTCCATTACCAGCCAGTGTTACTGTTCTTCAAACTGAAATGCGCCATCAAGTGACAA
TGGGTAGAATGGTAGCATAAAAGTATACTTTTTATTATGAAGCGTTTCAATGAGTTGGTTGTAT
GTGTTTATAAGGATAAACATGGCAACATACATCTGATGCTTATGGAAAGATTATTAGATATCTG
AAATATTCTTAGCCCAAGATTTACAGTACTTGAGTGAAATGTGTCGTGCCATACTATTCTTTAG
TGTTTCTCTTTGACATGCCAATTGCTAGTACCATGTTGATACATCCAATGCAACAACATTTGGT
TCAATCTCTGATTTACTTTGCTTCTCGTTGGATTTTGCAAATACAATTTGCTCAGTGCATTGCT
CTGTATTTTCTACAGATTATGATTCTTTTGATGACAATCTCTAGCTGTTCCCTCAAATAAACTA
GTGCATCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.210921179
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017