Detail information of Os03g0212600_circ_g.1


General Information
CircRNA Name Os03g0212600_circ_g.1
ID in PlantcircBase osa_circ_018487
Alias NA
Organism Oryza sativa
Position chr3: 5866333-5868763  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0212600
Parent gene annotation Targeting for Xklp2 family protein. (Os03t0212600-01)
Parent gene strand +
Alternative splicing Os03g0212600_circ_igg.1 Os03g0212600_circ_g.2 Os03g0212600_circ_g.3 Os03g0212600_circ_g.4 Os03g0212600_circ_g.5 Os03g0212600_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0212600-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTCAGTTCTATCTCTGGTTTGTTCTCCAAAAGATCTGCAAAACCAGCAACAGTTCCAAAGGA
ACCAAAATTTCATCCTCGGCCGGAAAAACAGTCATGacatcggagtcgctaagaagcagttgga
acaagaaactgaaggtcacaagccagcatccgttcaagctgagaaccgaggtaaacgatatgtt
tgatgcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACATCGGAGTCGCTAAGAAGCAGTTGGAACAAGAAACTGAAGGTCACAAGCCAGCATCCGTTCA
AGCTGAGAACCGAGGTAAACGATATGTTTGATGCAGTGTGAATCGTTGTTGTAAATCTATTGTG
TCATTAGGCCGTTTAGGATAGGAGAAGTGCACAAAAGTTTTAGGGCCCCTTTAAATCGCAGGGT
AGAAAAAATGGAGGAATAGGAAAAACACAGGATTCTGACAGGAATTGAAGTGTAAAACAGAGGA
TTGCAAAATACAGGAAAAACACAGGAATGATCGTTTGATTGGAGCGTAGGAAAAACGCAGGAAT
CGGATGAGAGAGATAGACTCAAAGGAAATTTTCCAAGAGGTTGGAGCTCTTGCTAAATTTCCTC
CAAAATCCACATGCAATGTGCCATTCCATAGGAATTTCATAGGAATTGGAAAGCTTCAATCCTT
TGAATCAAAGGGCCAAATAAAATTCCCATTTGAATCAAAGGATTTATGTAGGAATTTCATAGGA
TTCAAATCCTATAGGAAATTTTCCTATTTGGCCCTTTGATTCAAAGGATTGAAGCTTTCCAATT
CCTATGAAATTCCTATGGAATGGCACATTGCATGTGGATTTTGGAGGAAATTTAGCAAGAGCTC
CAACCTCTTGGAAAATTTCCTTTGAGTCTATCTCTCTCATCCGATTCCTGCGTTTTTCCTGCGC
TCCAATCAAACGACTATTCCTATGTTTTTCCTGTGTTTTGCAATCCTCTGTTTTACACTTCAAA
TCCTGTCAGAATCCTGTGTTTTTCCTATTCCTCCGTTTTTTCTACCCTGCGATTCAAAGGGGCC
CTATGGGTTAATTTGATACTACAGTGACAACAACAGCACAATCGACCTATACCTGGCTTCGTGT
CAATTTTGAAGTGTTTATTAAGTCCATTACCAGCCAGTGTTACTGTTCTTCAAACTGAAATGCG
CCATCAAGTGACAATGGGTAGAATGGTAGCATAAAAGTATACTTTTTATTATGAAGCGTTTCAA
TGAGTTGGTTGTATGTGTTTATAAGGATAAACATGGCAACATACATCTGATGCTTATGGAAAGA
TTATTAGATATCTGAAATATTCTTAGCCCAAGATTTACAGTACTTGAGTGAAATGTGTCGTGCC
ATACTATTCTTTAGTGTTTCTCTTTGACATGCCAATTGCTAGTACCATGTTGATACATCCAATG
CAACAACATTTGGTTCAATCTCTGATTTACTTTGCTTCTCGTTGGATTTTGCAAATACAATTTG
CTCAGTGCATTGCTCTGTATTTTCTACAGATTATGATTCTTTTGATGACAATCTCTAGCTGTTC
CCTCAAATAAACTAGTGCATCAAAATCAATCACTCCTTTTTTTCTTTTTTGCAACAGCAACGGG
GAAGGGTGAAGGAACAACAGTTTATTCAAAAAGTACAAGAAATGCTTATGGAGGAAGAGCAGCA
ACGTATACATATTGCACAAGGACTTCCATGGACAACAGATGAACCTGAGGTATGTCTAGACTAG
AGCATTCTTGTTTTCTCTTCAAAGCAAGGCTTTCATTACCAGTTTGTTCAAAAAGCAAAGTGAG
TTGGCTTAAAATTTGTTGTTTGCGCTTGTTTGTCCTGGCTGTTCTCATTGCAGCTAGGTTAGTT
AACATATCAAAATAGTCAGGATTGAGTATATTTGCACAGCTTTTTACCTATTTTTCTTTGAAAT
CAGTATGATGAATAATTTTACCTATTTTCTATGGTATCCTGACTCTGCGTTTTTATTCTGCAGT
GCTTGATAAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACAGTGATGT
ACGAGCAATTGAACGTGCAGAATTTGATCAATATGTGAGCATCGCACCACAAACTCATTATATG
TCTTGTGTATTATATTTAAGTAAACCACAACGTTACTTATTGCATATACTTGGTATGCTTGGTT
GAGAATGCAGGTGTCAGAAAGGAACAAGTTCGCTGAGCAACTAAGGCTGGAGAGGGAGCGGCAG
CAGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAGC
CAATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAGGTGAATATCCAGTTTATAAGTGAAACT
TAGCCTGCCAAATTTCTTTTTGTAGCACTTTCACTCTCGTCTGTTGCTTGGAAATAATGATTCA
GTATTGTCATTTCTTTCTAAAGAAATCAATGCTGTATATTTACTTTGCAGTAGCACACCAGCAT
TATCTTACCATTTGCACAAGTTACTAATACTCAGTTCTATCTCTGGTTTGTTCTCCAAAAGATC
TGCAAAACCAGCAACAGTTCCAAAGGAACCAAAATTTCATCCTCGGCCGGAAAAACAGTCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.102197813
Functional Information
Coding potential Y
Potential coding position 5868762-5868761(+)
Potential amino acid sequence MTSESLRSSWNKKLKVTSQHPFKLRTEQRGRVKEQQFIQKVQEMLMEEEQQRIHIAQGLPWTTD
EPECLIKPPVKETTEPVDLVLHSDVRAIERAEFDQYVSERNKFAEQLRLERERQQKLEEEEMIK
QLRKELVPKAQPMPYFDRPFIPKRSAKPATVPKEPKFHPRPEKQS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017