Detail information of Os03g0212600_circ_g.6


General Information
CircRNA Name Os03g0212600_circ_g.6
ID in PlantcircBase osa_circ_018492
Alias Os_ciR9108
Organism Oryza sativa
Position chr3: 5868124-5868763  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0212600
Parent gene annotation Targeting for Xklp2 family protein. (Os03t0212600-01)
Parent gene strand +
Alternative splicing Os03g0212600_circ_igg.1 Os03g0212600_circ_g.1 Os03g0212600_circ_g.2 Os03g0212600_circ_g.3 Os03g0212600_circ_g.4 Os03g0212600_circ_g.5
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0212600-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTCAGTTCTATCTCTGGTTTGTTCTCCAAAAGATCTGCAAAACCAGCAACAGTTCCAAAGGA
ACCAAAATTTCATCCTCGGCCGGAAAAACAGTCATGtgcttgataaagccaccagtcaaagaaa
ccaccgagcctgttgaccttgttctgcacagtgatgtacgagcaattgaacgtgcagaatttga
tcaatatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCTTGATAAAGCCACCAGTCAAAGAAACCACCGAGCCTGTTGACCTTGTTCTGCACAGTGATG
TACGAGCAATTGAACGTGCAGAATTTGATCAATATGTGAGCATCGCACCACAAACTCATTATAT
GTCTTGTGTATTATATTTAAGTAAACCACAACGTTACTTATTGCATATACTTGGTATGCTTGGT
TGAGAATGCAGGTGTCAGAAAGGAACAAGTTCGCTGAGCAACTAAGGCTGGAGAGGGAGCGGCA
GCAGAAGCTGGAGGAGGAAGAGATGATCAAGCAGCTCAGGAAAGAGCTGGTTCCTAAAGCTCAG
CCAATGCCGTACTTTGATCGGCCGTTCATTCCAAAAAGGTGAATATCCAGTTTATAAGTGAAAC
TTAGCCTGCCAAATTTCTTTTTGTAGCACTTTCACTCTCGTCTGTTGCTTGGAAATAATGATTC
AGTATTGTCATTTCTTTCTAAAGAAATCAATGCTGTATATTTACTTTGCAGTAGCACACCAGCA
TTATCTTACCATTTGCACAAGTTACTAATACTCAGTTCTATCTCTGGTTTGTTCTCCAAAAGAT
CTGCAAAACCAGCAACAGTTCCAAAGGAACCAAAATTTCATCCTCGGCCGGAAAAACAGTCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.114192995
Functional Information
Coding potential Y
Potential coding position 5868403-5868127(+)
5868762-5868127(+)
Potential amino acid sequence MIKQLRKELVPKAQPMPYFDRPFIPKRSAKPATVPKEPKFHPRPEKQSCA*(+)
MCLIKPPVKETTEPVDLVLHSDVRAIERAEFDQYVSERNKFAEQLRLERERQQKLEEEEMIKQL
RKELVPKAQPMPYFDRPFIPKRSAKPATVPKEPKFHPRPEKQSCA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017