Detail information of Os04g0602800_circ_g.5


General Information
CircRNA Name Os04g0602800_circ_g.5
ID in PlantcircBase osa_circ_025082
Alias Os_ciR3929
Organism Oryza sativa
Position chr4: 30419623-30420050  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method find_circ
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.6 Os04g0602800_circ_g.7 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGTAATTACAGGTGCAAGAATCAAAATAAAGAGTGCACATGATAGTGGTGCAAGTCAGAAAA
ATCAAAGAGAAATCACAAAAAACAAAGAAAACAAACttccaagctttattctaacagctctaat
ttgcagattcaggagagccatacaataataactaatgagaattttataaaacattaagcccaat
ttcatatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 428
Transcript exons: 30419623-30420050
TTCCAAGCTTTATTCTAACAGCTCTAATTTGCAGATTCAGGAGAGCCATACAATAATAACTAAT
GAGAATTTTATAAAACATTAAGCCCAATTTCATATTCCATATCGATCATTAAACCTGTGCAAAA
AGGCATCCGGTTTAGCTCGGTTTGGAGTGAGTAGTTTTATTTCCTTGATTCCTGTAGGAACACA
TACTTTCCTTTCTTTTTCATTTCTAGGAGAATACCTTATTGTAATAGTTATCCTTGATTGCACA
ACTCAAGACAACAGCACATCATTTTTCAGAGAGAAAAAAGTACACAGGAATATAATATGGTCTA
ATTGAAACAATGTAATTACAGGTGCAAGAATCAAAATAAAGAGTGCACATGATAGTGGTGCAAG
TCAGAAAAATCAAAGAGAAATCACAAAAAACAAAGAAAACAAAC

Genomic sequence TTCCAAGCTTTATTCTAACAGCTCTAATTTGCAGATTCAGGAGAGCCATACAATAATAACTAAT
GAGAATTTTATAAAACATTAAGCCCAATTTCATATTCCATATCGATCATTAAACCTGTGCAAAA
AGGCATCCGGTTTAGCTCGGTTTGGAGTGAGTAGTTTTATTTCCTTGATTCCTGTAGGAACACA
TACTTTCCTTTCTTTTTCATTTCTAGGAGAATACCTTATTGTAATAGTTATCCTTGATTGCACA
ACTCAAGACAACAGCACATCATTTTTCAGAGAGAAAAAAGTACACAGGAATATAATATGGTCTA
ATTGAAACAATGTAATTACAGGTGCAAGAATCAAAATAAAGAGTGCACATGATAGTGGTGCAAG
TCAGAAAAATCAAAGAGAAATCACAAAAAACAAAGAAAACAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.234224221
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015