Detail information of Os04g0602800_circ_g.6


General Information
CircRNA Name Os04g0602800_circ_g.6
ID in PlantcircBase osa_circ_025083
Alias NA
Organism Oryza sativa
Position chr4: 30420051-30422789  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.5 Os04g0602800_circ_g.7 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0602800-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGTCAGAAAGATCTTTGGGTTTAGTGACTCTGAGTACTTAAACGCAGGGTTGCATCGTACAAA
TGTTTGAATGATGTCTGCCGTTAGTCTTGCAACAAActgtcagttctgaatttttccaagggta
actgcatatgagttggtcaagcctgagttgtgggaagtaccatttcactacctttggcttttca
gactccct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCAGTTCTGAATTTTTCCAAGGGTAACTGCATATGAGTTGGTCAAGCCTGAGTTGTGGGAA
GTACCATTTCACTACCTTTGGCTTTTCAGACTCCCTCTGTATTTGGCATAGATAGTAAGATAGT
GCTTATGATGGAATTAAGAAAAATGATCATGATTCTATAAATGAAATTACAAGCTTACCACTTC
AATCTCCTCTTCAGTTAACAATCTGTAAGAACTGCCAATACCATCATGCACTTCGTTACCACGA
TAAATACTTCCAACATGTTTAAAAAACTTTGCTGAGTTCTTAGCTTCCCTTAGCATGTAATCTG
GTGGTTGACCCCTACAGAAATTGAATTAAGGAAAATAAAATTACATTAGTAAAAGCATTATAAT
ATGATGAACTCCAATATAACAGTATTTCTAGAAAGAGATCTAAATGCATGGACCAACAACATTG
CACTAAGAAAAATGCATATGCTCTACGAAGCATAAATGACTGCATGCCAAACAGCAGAGCTAGA
AGAGAATTACAGGTAAAGCCCTTACCCAAGAATTTTTACCATGCGCTGGAGCACATCATATTCT
GATGCTCCGGGAAATAAGGGAAGGCCTAAAAATAGTTCAGCAACTATGCAGCCAAATGACCACA
TGTCAATTGCAGTATTATAACTGTAAACAGTTAAGGTTCTAGCAAGTCACTCGGAAAGACCAGA
GCAATGGTACTTCACTGAAGGAAAATTCATTACTCATTCGATAGATATGAAACAGCATACCAGG
AAATGCTGATTAAGACGCTAATGGGTAATGAAATGAAACAAAATTGAATAGATATATAGGATAC
GGATAGCCAAGGATAACTTCTGGAGATCTGTAATAGCGGCTCTAGCAAAAAGGAAGGAAAGAAT
TGAAGTCAGACTCTCAATTAACTGATATTATTAAATAAGCATTTTAGAAATGAAGTGTGCTAAG
TTCCAGAAAGAAAACCTGAATGTATGAGTATACTGTTTTACCCTCCAAGCATGCTGAACCAAAA
TCAATCACTTTCACGGCTGCATCTGTTGTAACACTGTAAAAATTCAAGGTGCAACTGTCAAGCT
ACAGCTTGCTTCGTCCAAATAAACTAAACTTATGCAGAATCCAATGCAATTTACCTCGGAGTTA
ACAGGATATTTTCAGGCTTCAGGTCACAGTGAATTATTCTAGCGCCTCTCATCACAACCATGGC
ATCCAATATCTGAAAACATAAAACAGAAATATCAGGCAACAAGTATTAATTATATATATAATAA
GTAATACAGATAGACATCTCACCTGTTTTGAGAAGGCGCGAACAAATTTCATTTTCAGTCCTCT
GAAGCTGTTCCTTTTCAAGAGCTCATACCTAAAATATTGGAGTTTATAATGCAGTTTGAGGGGG
TGGGGGAGAAAATAATGGATGAACATAGTAGCAAAAGAAATTCTAAAGTTAACTTACAGGTTTT
GACCAAGCATTTCAAATGCTATACACAGGTGATTTTGGAATAGGAGATAGTCAAGCATACGGAC
AATGTTATACTGGTCATCAGGATCATGTGTTTGATTCAACTGCAAGACCACCCATAATTGTAAC
GGTGAGTAATGAACTTATTGCAGATAGAAAGCACAATAAAGTTCCCGATGTACTACCATACCGC
TCTCAATAATGAAACCTCCACGAGCGCTTGATGGTAAAATGCAGGCTGGTTTTTAATAACCTTC
ACAGCAACATAATCATTGGTTTCAGTGTCCAAGCATTTGACAACCTGACCGAACGTTCCTTGGC
CAAGCATTTCCTTGACTACGAACCTGAGCACCACAATAAAGAAAAAACGAACATATAATTCAAT
GGGATGCTAAACAATGTTCAACATTCCTGGGATTTAGAACAGGGGATGTCAAAGGAAAGACAAA
CAGGACAGGATTCTTTAACTACTTCAAAATTTGATTGTTTGTTATACAGTCCTGATCCCCCATC
CACCAGTACTATCCTTATGATATCAAACAAACGCTTTGCCATGATGCTGAATTAACTCCCATAC
GAGAAGGGCAGTGGAGACTAGAGAGGTTATCAGCGCTTTTAATTTTGTTTAAAGGGTTACAGTA
GAAATTTGGAGGCTTGAAGGAAGTGCAAAAGACAAAATTTAGATTCCTCATCACTCGGTACTAG
GAACCTAGATGATTTCTTCCCTTGTGGTATGAAGTAAAAACTCTGGCATACCATGGCTATCTGC
ACGATACTCCTATATTGGCATGATTGGCAATGGGATAAAATATCATGAAAGCTTGAAGAGCATT
TAAGGTATATTCAACCACTACCAGTTCATATAGTGACTTCTCAATGTGTGGAATTTTATTCAGT
ATCATTATTACAGTTTTCAACTCATGAATTTGTGTATTGTTGATACTTGAATTAATAATCTAGA
CCAATCAACCTATAATTTAATGGTGCATAGTGCTCTCCAAAACTGGACAAAAAGATGAAGCAAA
TCAAACACAACCGAAGTAGCATCAATTCTGAGAAAAGTTAAACCTCCGATTTGATGTCCTGTTG
ACCAATTCCAAGTTGACATACAATATGAGGTCCCAATTCGCATTATCAAGTCCATCATTATGAG
CTGGGGTTGAAGGATTCGTCAGAAAGATCTTTGGGTTTAGTGACTCTGAGTACTTAAACGCAGG
GTTGCATCGTACAAATGTTTGAATGATGTCTGCCGTTAGTCTTGCAACAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.124600736
Functional Information
Coding potential Y
Potential coding position 30421851-30422730(-)
Potential amino acid sequence MLGQGTFGQVVKCLDTETNDYVAVKVIKNQPAFYHQALVEVSLLRALNQTHDPDDQYNIVRMLD
YLLFQNHLCIAFEMLGQNLYELLKRNSFRGLKMKFVRAFSKQILDAMVVMRGARIIHCDLKPEN
ILLTPSVTTDAAVKVIDFGSACLEGKTVYSYIQSRYYRSPEVILGYPYNTAIDMWSFGCIVAEL
FLGLPLFPGASEYDVLQRMVKILGGQPPDYMLREAKNSAKFFKHVGSIYRGNEVHDGIGSSYRL
LTEEEIEVRESEKPKVVKWYFPQLRLDQLICSYPWKNSELTVCCKTNGRHHSNICTMQPCV*(-
)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017