Detail information of Os04g0602800_circ_g.9


General Information
CircRNA Name Os04g0602800_circ_g.9
ID in PlantcircBase osa_circ_025086
Alias Os04circ12756
Organism Oryza sativa
Position chr4: 30421516-30421625  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.7 Os04g0602800_circ_g.8 Os04g0602800_circ_g.10
Support reads 2
Tissues panicle
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0602800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCAAGCATACGGACAATGTTATACTGGTCATCAGGATCATGTGTTTGATTCAAaggttttga
ccaagcatttcaaatgctatacacaggtgattttggaataggagat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 110
Transcript exons: 30421516-30421625
AGGTTTTGACCAAGCATTTCAAATGCTATACACAGGTGATTTTGGAATAGGAGATAGTCAAGCA
TACGGACAATGTTATACTGGTCATCAGGATCATGTGTTTGATTCAA

Genomic sequence AGGTTTTGACCAAGCATTTCAAATGCTATACACAGGTGATTTTGGAATAGGAGATAGTCAAGCA
TACGGACAATGTTATACTGGTCATCAGGATCATGTGTTTGATTCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.268938106
Functional Information
Coding potential Y
Potential coding position 30421539-30421562(+)
30421582-30421624(-)
Potential amino acid sequence MLYTGDFGIGDSQAYGQCYTGHQDHVFDSKVLTKHFKCYTQVILE*(+)
MLDYLLFQNHLCIAFEMLGQNL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015