Detail information of Os04g0602800_circ_g.2


General Information
CircRNA Name Os04g0602800_circ_g.2
ID in PlantcircBase osa_circ_025080
Alias NA
Organism Oryza sativa
Position chr4: 30419272-30419495  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.1 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.7 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACCTGAGCATAAAAATAGTTAAATATGAAAATGAAAAAATGCTCCTTATACTTTTACAGAAA
TGTGAATGCAATATAACCATACTACGTCGCACATACaagtccttccgcatgcatatggattcct
tggaatgaaaaatatgcaagaatacagaataaattgtgttcataggtgcaagctatccaatttt
attggtac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 224
Transcript exons: 30419272-30419495
AAGTCCTTCCGCATGCATATGGATTCCTTGGAATGAAAAATATGCAAGAATACAGAATAAATTG
TGTTCATAGGTGCAAGCTATCCAATTTTATTGGTACTGTTAGATGAAAGATTCACCAGCTTAAC
CTGAGCATAAAAATAGTTAAATATGAAAATGAAAAAATGCTCCTTATACTTTTACAGAAATGTG
AATGCAATATAACCATACTACGTCGCACATAC

Genomic sequence AAGTCCTTCCGCATGCATATGGATTCCTTGGAATGAAAAATATGCAAGAATACAGAATAAATTG
TGTTCATAGGTGCAAGCTATCCAATTTTATTGGTACTGTTAGATGAAAGATTCACCAGCTTAAC
CTGAGCATAAAAATAGTTAAATATGAAAATGAAAAAATGCTCCTTATACTTTTACAGAAATGTG
AATGCAATATAACCATACTACGTCGCACATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.269999814
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017