Detail information of Os04g0602800_circ_g.4


General Information
CircRNA Name Os04g0602800_circ_g.4
ID in PlantcircBase osa_circ_041859
Alias NA
Organism Oryza sativa
Position chr4: 30419496-30420381  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.7 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10
Support reads NA
Tissues root, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0602800-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCATCATGCACTTCGTTACCACGATAAATACTTCCAACATGTTTAAAAAACTTTGCTGAGTTC
TTAGCTTCCCTTAGCATGTAATCTGGTGGTTGACCCctgcaatggcgaccatcgctcattggga
tcaaatttcagaagcccctttaggaaatcaaccagtatcacccgctctgccttttctgtctctg
aatcaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 334
Transcript exons: 30419496-30419584,30420051-30420150,30420237-30420381
CTGCAATGGCGACCATCGCTCATTGGGATCAAATTTCAGAAGCCCCTTTAGGAAATCAACCAGT
ATCACCCGCTCTGCCTTTTCTGTCTCTGTCAGTTCTGAATTTTTCCAAGGGTAACTGCATATGA
GTTGGTCAAGCCTGAGTTGTGGGAAGTACCATTTCACTACCTTTGGCTTTTCAGACTCCCTCAC
TTCAATCTCCTCTTCAGTTAACAATCTGTAAGAACTGCCAATACCATCATGCACTTCGTTACCA
CGATAAATACTTCCAACATGTTTAAAAAACTTTGCTGAGTTCTTAGCTTCCCTTAGCATGTAAT
CTGGTGGTTGACCC

Genomic sequence CTGCAATGGCGACCATCGCTCATTGGGATCAAATTTCAGAAGCCCCTTTAGGAAATCAACCAGT
ATCACCCGCTCTGCCTTTTCTGTCTCTGAATCAAAATGCAAGACCTGAGAACATATATCAAACT
TCCAAGCTTTATTCTAACAGCTCTAATTTGCAGATTCAGGAGAGCCATACAATAATAACTAATG
AGAATTTTATAAAACATTAAGCCCAATTTCATATTCCATATCGATCATTAAACCTGTGCAAAAA
GGCATCCGGTTTAGCTCGGTTTGGAGTGAGTAGTTTTATTTCCTTGATTCCTGTAGGAACACAT
ACTTTCCTTTCTTTTTCATTTCTAGGAGAATACCTTATTGTAATAGTTATCCTTGATTGCACAA
CTCAAGACAACAGCACATCATTTTTCAGAGAGAAAAAAGTACACAGGAATATAATATGGTCTAA
TTGAAACAATGTAATTACAGGTGCAAGAATCAAAATAAAGAGTGCACATGATAGTGGTGCAAGT
CAGAAAAATCAAAGAGAAATCACAAAAAACAAAGAAAACAAACCTGTCAGTTCTGAATTTTTCC
AAGGGTAACTGCATATGAGTTGGTCAAGCCTGAGTTGTGGGAAGTACCATTTCACTACCTTTGG
CTTTTCAGACTCCCTCTGTATTTGGCATAGATAGTAAGATAGTGCTTATGATGGAATTAAGAAA
AATGATCATGATTCTATAAATGAAATTACAAGCTTACCACTTCAATCTCCTCTTCAGTTAACAA
TCTGTAAGAACTGCCAATACCATCATGCACTTCGTTACCACGATAAATACTTCCAACATGTTTA
AAAAACTTTGCTGAGTTCTTAGCTTCCCTTAGCATGTAATCTGGTGGTTGACCC
Conservation Information
Conserved circRNAs osi_circ_014739
PMCS 0.140612839
Functional Information
Coding potential Y
Potential coding position 30420364-30420348(-)
30419520-30420348(-)
Potential amino acid sequence MLREAKNSAKFFKHVGSIYRGNEVHDGIGSSYRLLTEEEIEVRESEKPKVVKWYFPQLRLDQLI
CSYPWKNSELTETEKAERVILVDFLKGLLKFDPNERWSPLQGSTTRLHAKGS*(-)
MSDGRHCRGQPPDYMLREAKNSAKFFKHVGSIYRGNEVHDGIGSSYRLLTEEEIEVRESEKPKV
VKWYFPQLRLDQLICSYPWKNSELTETEKAERVILVDFLKGLLKFDPNERWSPLQGSTTRLHAK
GS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study