Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0602800_circ_g.4 |
ID in PlantcircBase | osa_circ_041859 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 30419496-30420381 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRI-long |
Parent gene | Os04g0602800 |
Parent gene annotation |
Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB a0105A11.22 protein. (Os04t0602800-02) |
Parent gene strand | - |
Alternative splicing | Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.7 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10 |
Support reads | NA |
Tissues | root, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0602800-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014739 |
PMCS | 0.140612839 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30420364-30420348(-) 30419520-30420348(-) |
Potential amino acid sequence |
MLREAKNSAKFFKHVGSIYRGNEVHDGIGSSYRLLTEEEIEVRESEKPKVVKWYFPQLRLDQLI CSYPWKNSELTETEKAERVILVDFLKGLLKFDPNERWSPLQGSTTRLHAKGS*(-) MSDGRHCRGQPPDYMLREAKNSAKFFKHVGSIYRGNEVHDGIGSSYRLLTEEEIEVRESEKPKV VKWYFPQLRLDQLICSYPWKNSELTETEKAERVILVDFLKGLLKFDPNERWSPLQGSTTRLHAK GS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | this study |