Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0602800_circ_g.7 |
ID in PlantcircBase | osa_circ_025084 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 30420588-30422789 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0602800 |
Parent gene annotation |
Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB a0105A11.22 protein. (Os04t0602800-02) |
Parent gene strand | - |
Alternative splicing | Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0602800-01:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.134631222 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30422762-30420895(+) 30421851-30422776(-) |
Potential amino acid sequence |
MMSAVSLATNQEFLPCAGAHHILMLREIREGLKIVQQLCSQMTTCQLQYYKDSQG*(+) MLGQGTFGQVVKCLDTETNDYVAVKVIKNQPAFYHQALVEVSLLRALNQTHDPDDQYNIVRMLD YLLFQNHLCIAFEMLGQNLYELLKRNSFRGLKMKFVRAFSKQILDAMVVMRGARIIHCDLKPEN ILLTPSVTTDAAVKVIDFGSACLEGKTVYSYIQSRYYRSPEVILGYPYNTAIDMWSFGCIVAEL FLGLPLFPGASEYDVLQRMVKILGLLQD*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |