Detail information of Os04g0602800_circ_g.7


General Information
CircRNA Name Os04g0602800_circ_g.7
ID in PlantcircBase osa_circ_025084
Alias NA
Organism Oryza sativa
Position chr4: 30420588-30422789  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0602800-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGTCAGAAAGATCTTTGGGTTTAGTGACTCTGAGTACTTAAACGCAGGGTTGCATCGTACAAA
TGTTTGAATGATGTCTGCCGTTAGTCTTGCAACAAAccaagaatttttaccatgcgctggagca
catcatattctgatgctccgggaaataagggaaggcctaaaaatagttcagcaactatgcagcc
aaatgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAGAATTTTTACCATGCGCTGGAGCACATCATATTCTGATGCTCCGGGAAATAAGGGAAGGC
CTAAAAATAGTTCAGCAACTATGCAGCCAAATGACCACATGTCAATTGCAGTATTATAACTGTA
AACAGTTAAGGTTCTAGCAAGTCACTCGGAAAGACCAGAGCAATGGTACTTCACTGAAGGAAAA
TTCATTACTCATTCGATAGATATGAAACAGCATACCAGGAAATGCTGATTAAGACGCTAATGGG
TAATGAAATGAAACAAAATTGAATAGATATATAGGATACGGATAGCCAAGGATAACTTCTGGAG
ATCTGTAATAGCGGCTCTAGCAAAAAGGAAGGAAAGAATTGAAGTCAGACTCTCAATTAACTGA
TATTATTAAATAAGCATTTTAGAAATGAAGTGTGCTAAGTTCCAGAAAGAAAACCTGAATGTAT
GAGTATACTGTTTTACCCTCCAAGCATGCTGAACCAAAATCAATCACTTTCACGGCTGCATCTG
TTGTAACACTGTAAAAATTCAAGGTGCAACTGTCAAGCTACAGCTTGCTTCGTCCAAATAAACT
AAACTTATGCAGAATCCAATGCAATTTACCTCGGAGTTAACAGGATATTTTCAGGCTTCAGGTC
ACAGTGAATTATTCTAGCGCCTCTCATCACAACCATGGCATCCAATATCTGAAAACATAAAACA
GAAATATCAGGCAACAAGTATTAATTATATATATAATAAGTAATACAGATAGACATCTCACCTG
TTTTGAGAAGGCGCGAACAAATTTCATTTTCAGTCCTCTGAAGCTGTTCCTTTTCAAGAGCTCA
TACCTAAAATATTGGAGTTTATAATGCAGTTTGAGGGGGTGGGGGAGAAAATAATGGATGAACA
TAGTAGCAAAAGAAATTCTAAAGTTAACTTACAGGTTTTGACCAAGCATTTCAAATGCTATACA
CAGGTGATTTTGGAATAGGAGATAGTCAAGCATACGGACAATGTTATACTGGTCATCAGGATCA
TGTGTTTGATTCAACTGCAAGACCACCCATAATTGTAACGGTGAGTAATGAACTTATTGCAGAT
AGAAAGCACAATAAAGTTCCCGATGTACTACCATACCGCTCTCAATAATGAAACCTCCACGAGC
GCTTGATGGTAAAATGCAGGCTGGTTTTTAATAACCTTCACAGCAACATAATCATTGGTTTCAG
TGTCCAAGCATTTGACAACCTGACCGAACGTTCCTTGGCCAAGCATTTCCTTGACTACGAACCT
GAGCACCACAATAAAGAAAAAACGAACATATAATTCAATGGGATGCTAAACAATGTTCAACATT
CCTGGGATTTAGAACAGGGGATGTCAAAGGAAAGACAAACAGGACAGGATTCTTTAACTACTTC
AAAATTTGATTGTTTGTTATACAGTCCTGATCCCCCATCCACCAGTACTATCCTTATGATATCA
AACAAACGCTTTGCCATGATGCTGAATTAACTCCCATACGAGAAGGGCAGTGGAGACTAGAGAG
GTTATCAGCGCTTTTAATTTTGTTTAAAGGGTTACAGTAGAAATTTGGAGGCTTGAAGGAAGTG
CAAAAGACAAAATTTAGATTCCTCATCACTCGGTACTAGGAACCTAGATGATTTCTTCCCTTGT
GGTATGAAGTAAAAACTCTGGCATACCATGGCTATCTGCACGATACTCCTATATTGGCATGATT
GGCAATGGGATAAAATATCATGAAAGCTTGAAGAGCATTTAAGGTATATTCAACCACTACCAGT
TCATATAGTGACTTCTCAATGTGTGGAATTTTATTCAGTATCATTATTACAGTTTTCAACTCAT
GAATTTGTGTATTGTTGATACTTGAATTAATAATCTAGACCAATCAACCTATAATTTAATGGTG
CATAGTGCTCTCCAAAACTGGACAAAAAGATGAAGCAAATCAAACACAACCGAAGTAGCATCAA
TTCTGAGAAAAGTTAAACCTCCGATTTGATGTCCTGTTGACCAATTCCAAGTTGACATACAATA
TGAGGTCCCAATTCGCATTATCAAGTCCATCATTATGAGCTGGGGTTGAAGGATTCGTCAGAAA
GATCTTTGGGTTTAGTGACTCTGAGTACTTAAACGCAGGGTTGCATCGTACAAATGTTTGAATG
ATGTCTGCCGTTAGTCTTGCAACAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.134631222
Functional Information
Coding potential Y
Potential coding position 30422762-30420895(+)
30421851-30422776(-)
Potential amino acid sequence MMSAVSLATNQEFLPCAGAHHILMLREIREGLKIVQQLCSQMTTCQLQYYKDSQG*(+)
MLGQGTFGQVVKCLDTETNDYVAVKVIKNQPAFYHQALVEVSLLRALNQTHDPDDQYNIVRMLD
YLLFQNHLCIAFEMLGQNLYELLKRNSFRGLKMKFVRAFSKQILDAMVVMRGARIIHCDLKPEN
ILLTPSVTTDAAVKVIDFGSACLEGKTVYSYIQSRYYRSPEVILGYPYNTAIDMWSFGCIVAEL
FLGLPLFPGASEYDVLQRMVKILGLLQD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017