Detail information of BGIOSGA014475_circ_g.1


General Information
CircRNA Name BGIOSGA014475_circ_g.1
ID in PlantcircBase osi_circ_005691
Alias 4:28379285|28379562
Organism Oryza sativa ssp. indica
Position chr4: 28379285-28379562  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014475
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.2 BGIOSGA016994_circ_g.3 BGIOSGA016994_circ_g.4 BGIOSGA014479_circ_g.1 BGIOSGA016995_circ_g.1 BGIOSGA014476_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.2 BGIOSGA014474_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014475-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGGACCACAAGCCCAGACGACACATATGGCTGAGTGAAATCAACAACCTTTGTTCGATTTGT
GACAATAGTTACATCGCCTACCACAGCATCAAAGTCcagaacacagtaataagctgtttcgcag
gagggccacggaattcatcattgattctatgttcaagcatccaaactactgtccctatgataag
aaagaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAACACAGTAATAAGCTGTTTCGCAGGAGGGCCACGGAATTCATCATTGATTCTATGTTCAA
GCATCCAAACTACTGTCCCTATGATAAGAAAGAACAGTCCAGTGACGGTCCACATCTTGATCGT
GAATGGCTGCAGAAAGGCCCATCCACCCGAGTTCTGCCTCTTAACAGAGGTAAGGACCACAAGC
CCAGACGACACATATGGCTGAGTGAAATCAACAACCTTTGTTCGATTTGTGACAATAGTTACAT
CGCCTACCACAGCATCAAAGTC
Conservation Information
Conserved circRNAs osa_circ_025010*
PMCS
Functional Information
Coding potential Y
Potential coding position 28379405-28379546(-)
28379342-28379494(+)
Potential amino acid sequence MWTVTGLFFLIIGTVVWMLEHRINDEFRGPPAKQLITVFWTLMLW*(-)
MFKHPNYCPYDKKEQSSDGPHLDREWLQKGPSTRVLPLNRGKDHKPRRHIWLSEINNLCSICDN
SYIAYHSIKVQNTVISCFAGGPRNSSLILCSSIQTTVPMIRKNSPVTVHILIVNGCRKAHPPEF
CLLTEVRTTSPDDTYG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021