Detail information of BGIOSGA016995_circ_g.1


General Information
CircRNA Name BGIOSGA016995_circ_g.1
ID in PlantcircBase osi_circ_005689
Alias 4:28351194|28352719
Organism Oryza sativa ssp. indica
Position chr4: 28351194-28352719  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016995
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.2 BGIOSGA016994_circ_g.3 BGIOSGA016994_circ_g.4 BGIOSGA014479_circ_g.1 BGIOSGA014476_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.1 BGIOSGA014475_circ_g.2 BGIOSGA014474_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016995-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGAGCGACTCCTTGGAGCCCTTTCTGCACACATGTGGCCTGGAATGATTCTGAAATCTGGAA
ACAGAATAACCGTTCCATCCTTGGTTGAGAAAGAAGgtggaacattgacacaaagtactactca
gcagatctttctgtttggacggcacatcttgggcaagggttttctcttgattccctccctcatc
tcgaccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAACATTGACACAAAGTACTACTCAGCAGATCTTTCTGTTTGGACGGCACATCTTGGGCAA
GGGTTTTCTCTTGATTCCCTCCCTCATCTCGACCAGTTGGATGCTCTTGTTATGGTCTTCGATA
TGAGTGATGTCCGAACTGCATCCCTAATATACATTCTTACATTCTGCTGTTCCATTTTCTATCT
TCTATTTTTCTAAAATTTGTGAACTATATAATTTCTGTATCTTATTTTTTTAATCTTTGATAGT
ACAGTAGGCTAATTGTCTTTGAAATGATGCAGGAATCATCCTTCCTTACTCTCCAGAACTGGGT
TTCTAGTGTTGATGTTCAGAGGTTTGAAATTCTGTTGTGCATTGGAAATAAAGCAGATCTTGTG
CTTGGCCATGGTGCACACGTAGAATATAGGAGGCGTATGCAAAAGATTGGCGAGTCAAGTACTG
ATCCACATCCTGAATATTTGGATTTTGGGATAAACGAAAGTGAAGGTTGTGGATTGTTATCAGA
GGAAGAACCACAAATAGAGATCAGAGACTCCGCTTCACATTGGTGCATTGAACACAATATTGAG
TATGTCGAAGCTTGTGCTTCCAATGCTGACTTTGATAAATGTAAGTAAGTTGTATTGAGGCTGT
GATTCTTAAATGTTTTCTCCACATCGTTTTCTTCATCAACACATTTTTTTTAGTTATATGTATG
CTACCATATTGAACAGTGGTGTCGTTTAGAAATAATTTTCTGTATGCCATTCATCTGCTTCCAT
CATAGTGTTTGACTAGATTTCTCACATCTTTCTTTAGTAATGTAGAAGATGCAGGTAGGGCCGA
ACTTCTGTTAGTAACATCATAAGTTGCACATTCTTAGTTGTTAATGAAGCTGAGTGAGGACATT
GAACTTCTTAGTACAAAGGGGAAAATAGTTTCAGCTTCTTTGTAAAATGCTTCAGGCTGAACCA
TGTTTGGGTTGGTTTAAGTCTTCAAACTCAAATGCGTCTAAAATAAAGCTAAAACCTTTCCATG
TGTTGATCCTTTTTTTTTTTAGTTTTAACATATGTTAACCGAGACTTTGAGATTCTTTCTGACA
GTTTGGAAACCGAATTACTTAACAGCTATATTTCATTTGATTGAATTGAACTGTGAGTTGCTCT
AGTTTGGGCAGTTAAGTTTCACTTTGTCAGATTATTTCTGTTATTTTATGAAGTTATTGTGCAG
ACCTACATGCTACAAATTAGCCCCATCTATGGTTGTTTTTATTTGTATTCTTTAATGAAAAATT
ATCATTATTGTGTTGATAATCTCCAATGAAAAAGGACTTGTTCTGGCCAAAGTCGAATATTTAC
TGGATGTTGGAATGTTTCTTTCTTAATTGACTTATATCCGTGCCTTGCAATAGGTCTATCGGTG
AATGGAGATAGTCAAGGCTTAGAGCGACTCCTTGGAGCCCTTTCTGCACACATGTGGCCTGGAA
TGATTCTGAAATCTGGAAACAGAATAACCGTTCCATCCTTGGTTGAGAAAGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 28351204-28351728(-)
28351310-28351321(+)
Potential amino acid sequence MFHLLSQPRMERLFCFQISESFQATCVQKGLQGVALSLDYLHSPIDIYQSQHWKHKLRHTQYCV
QCTNVKRSL*(-)
MVFDMSDESSFLTLQNWVSSVDVQRFEILLCIGNKADLVLGHGAHVEYRRRMQKIGESSTDPHP
EYLDFGINESEGCGLLSEEEPQIEIRDSASHWCIEHNIEYVEACASNADFDKCLSVNGDSQGLE
RLLGALSAHMWPGMILKSGNRITVPSLVEKEGGTLTQSTTQQIFLFGRHILGKGFLLIPSLIST
SWMLLLWSSI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021