Detail information of BGIOSGA014475_circ_g.2


General Information
CircRNA Name BGIOSGA014475_circ_g.2
ID in PlantcircBase osi_circ_000523
Alias NA
Organism Oryza sativa ssp. indica
Position chr4: 28380148-28380777  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method DCC
Parent gene BGIOSGA014475
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.2 BGIOSGA016994_circ_g.3 BGIOSGA016994_circ_g.4 BGIOSGA014479_circ_g.1 BGIOSGA016995_circ_g.1 BGIOSGA014476_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.1 BGIOSGA014474_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TC-GT
Number of exons covered BGIOSGA014475-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATCGCCTCTTGGAAAGTTCATCGCCTAAAGAGGATATTGCATTTCTTCCATAATCATTATCC
ACAAATATGGTTGTCACTTGCTTCCACCCATAATACccgccgtcaaagacactcaatgcttcca
aattcaaccctcttcctgaaatttcatttagtttggggtcaggagagaaagaaatgtttccgcc
actattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGCCGTCAAAGACACTCAATGCTTCCAAATTCAACCCTCTTCCTGAAATTTCATTTAGTTTGG
GGTCAGGAGAGAAAGAAATGTTTCCGCCACTATTGAAAAATGCATCCAGCGCATGAGCAAGCAT
CCAGACAGTATCATAAGCATACAGGCCATAAGTACTAAGCAAGAATCTGCTGTGACCACTATCC
TCCTTAAGCAATTCACTCCATTTTGAAGACAACATACTCTTCCTTCTGGTATTTTCAGTGTGGT
GACGCAATGTAAGAACACCCTGCATTGTGCTCAGTAATCCAATGTCGAGATGTACCGATGGATC
AAGGTATGAAGTGAGCCAATCTGTTGCAATCCACGCATACCCATTGGATACCATGCCAAGTTTG
AGTGCTTGTTGGAAAACCACAAGTCCAGAGTCGGGATTCGCATGCAGGATGATGACCCGAGACT
CCATCATTGCAACCTTGATCAGCACATCAGCTATTTCATTGTTGCTTGCTCCTGGCCTAAATGG
AGCTTTATACAGGATCTTAGATCGCCTCTTGGAAAGTTCATCGCCTAAAGAGGATATTGCATTT
CTTCCATAATCATTATCCACAAATATGGTTGTCACTTGCTTCCACCCATAATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019