Detail information of BGIOSGA014474_circ_g.1


General Information
CircRNA Name BGIOSGA014474_circ_g.1
ID in PlantcircBase osi_circ_014711
Alias Chr04:30278537_30280692(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28386001-28388157  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA014474
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.2 BGIOSGA016994_circ_g.3 BGIOSGA016994_circ_g.4 BGIOSGA014479_circ_g.1 BGIOSGA016995_circ_g.1 BGIOSGA014476_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.1 BGIOSGA014475_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014474-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACAATCATCCAATCTTAATATATGTATCATGTAAAAGAGCTTAAGCATACCTGTCTTCTGGCC
CATCATCGCCACTATGCAAGCCACTCTTTTCAGAACccacaagatggccgggttcgacattgaa
ggaattacattcttatgaattgttgcaaggacctgcaatttatagatcatcactgctcagtact
cgcagtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACAAGATGGCCGGGTTCGACATTGAAGGAATTACATTCTTATGAATTGTTGCAAGGACCTGC
AATTTATAGATCATCACTGCTCAGTACTCGCAGTTAATGTGCACTAAAAGAAGGCAGTATCACA
AAACAAGACCAAAATTCTTAGTGTGGCAACAGCAAACAACAAAATTTGTTGAACAAATAGTTAC
ATCACCTTAATTGGCCATTGAATTATTACAGTACTCCAAGTAAACTAAGTCCATAAAGCTACAT
GTAAATAAATAAATTACATCCTCGGAAAAATTGCTGTTGCAAGAGTGCTCATGCAACACTTATA
CCATTCATAAAAAGTTAAAGATGAAGCAATTGAGACCAATTGCTACTTATTGTAGAATGTTGAA
AGGGCGAAGGTCTGGTTTCAAGCCAAGAAAAAAAAAGAGAGAGATAGCAGCATCACATCATTTC
TAATTGCTTTAAGATAAATTAGAGATTAACCTCCTTGTACACATCAAGCGGAAGTGGCAGCTTG
AGAAAGGATATCCAGGCTTTGCTGAACTTTGATTTGAGTTTTTTGTTAATGTAAGTAGCAGAGC
AGTCCTGCAGAACGTTAAAGCTCAGTCACTAGGCAAAGTTGCAGTTTACTTCATGAAGTGTATA
TGAAGTACCTCAGATGAGTTCTTTTCTCCTTTGGAAGAAAGGCCTTCACAAACAAAAAAGAGAA
GTCAGAATAACATCACTATTCCAACAATGTTGCATAGCAAAGACCAACAAATGAAAAGGAGCGG
AGATGGATAAGTGAAGTAGGCAAGTAGAACATTCAAAAGGAACAATGACTATGAGACATGTGGG
TGTCTTTGTGAGAGAGAATTCAACAATTACAGAAAGTAGGGGTGGGCGTCCAGGTTCTTCGGTT
CGATTTTTACCGCTTGGTGGATTTTTGGCTTTTAAGAAACACCAACCGATCTCATCAGGGAAAA
ACCAAACTACTTCGATTCGGTTTTGTTTTTTTTACTAAAGAAACCGACCGAACAATCTGCTTCC
GCCCCACCTATGTGTGATGGCCATTGGGCAGTAGTCTGCCAGATCCCACAAGGGTCCGCTGCTT
GAATCATGCGAGGGCGTGTGCGTGGAGCCACCGTCAGCAAAAATCATGCGACGAAAAGGCACGG
TCTCCCACGCGCTCTATCTGTTGAGAACACTGTCCTCGGTTTTATCAGGAGGCTCGGTTTATAG
GAGATTTACGGGAGATAAGTACTGATCTTCCAACCAAACACCGAAGCAGCCAATTATAAAAACC
AAACCTGCCACCAGACAAACTGCTACTTAAGTTCGTTCAGCCTTCAGTTAATGGTTTATATCTG
CCTACCCCTAACAGAAAATGGGTCTCAAGGTTCTTCAATAGATAAGGACATACATGAAAAAGGG
AATGCAATGTATAAAAGGACAACTGTAAGTATTTTTACATACTGGAAAATAGAGCCTTCAAAAG
AGTCAAGAGACTCACCAACAGTACTCCACATATTAAACTTTGACTCCTGAAAATCCAAGGCAGG
AATATGCGCCAAAGTATTGTATATATTGCGTACATAAATAGTGCCTCTGTTAAAGCAAGAGAGA
AGATCAGAAGAATATAAATGGGACTAAGAAAGTTGTTAAAAACTAGAAATGTATAAACATTGGC
AAATCACACTACAAGTGTTTTATGGGATATCTAAATCAAACAATTACACGATCAAAATAATTCA
CAACATAGATCACTACCTGCAAGTCTTCAAATGATATTGCAGGGGTAAAAATTTGAAAAGCACA
TGCCATTGTACTTTCCAAGAACACACCAACACAGAAATGCAAGCATGAAGTACAAGCAACACAT
CAGAGTACCAATTGTTCCTTAACAGGCAGAGATGGATCACATGAACATGTAAAACAACAACAAA
GCTTTCCCAGCTTACCTTTTTCTTTCGAAGCAATACTGCAAAACATTTGCGTGCAGGCATTTGA
AACGCTCATTTAATGCAATGCACAATGGTATATTGGTTGGATCTTACCATAGGTAATACTATGA
ATTTATGATCACAATCATCCAATCTTAATATATGTATCATGTAAAAGAGCTTAAGCATACCTGT
CTTCTGGCCCATCATCGCCACTATGCAAGCCACTCTTTTCAGAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5789
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021