Detail information of Os04g0585200_circ_g.1


General Information
CircRNA Name Os04g0585200_circ_g.1
ID in PlantcircBase osa_circ_025010
Alias NA
Organism Oryza sativa
Position chr4: 29567615-29567892  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os04g0585200
Parent gene annotation Similar to Glutamate receptor. (Os04t0585200-01);Similar to Glut
amate receptor 3.1. (Os04t0585200-02)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0585200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGGACCACAAGCCCAGACGACACATATGGCTGAGTGAAATCAACAACCTTTGTTCGATTTGT
GATGATAGTTACATCGCCTACCACAGCATCAAAGTCcagaacacagtaataagctgtttcgcag
gagggccacggaattcatcattgattctatgttcaagcatccaaactactgtccctatgataag
aaagaaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 278
Transcript exons: 29567615-29567892
CAGAACACAGTAATAAGCTGTTTCGCAGGAGGGCCACGGAATTCATCATTGATTCTATGTTCAA
GCATCCAAACTACTGTCCCTATGATAAGAAAGAACAGTCCAGTGACGGTCCACATCTTGATCGT
GAATGGCTGCAGAAAGGCCCATCCACCCGAGTTCTGCCTCTTAACAGAGGTAAGGACCACAAGC
CCAGACGACACATATGGCTGAGTGAAATCAACAACCTTTGTTCGATTTGTGATGATAGTTACAT
CGCCTACCACAGCATCAAAGTC

Genomic sequence CAGAACACAGTAATAAGCTGTTTCGCAGGAGGGCCACGGAATTCATCATTGATTCTATGTTCAA
GCATCCAAACTACTGTCCCTATGATAAGAAAGAACAGTCCAGTGACGGTCCACATCTTGATCGT
GAATGGCTGCAGAAAGGCCCATCCACCCGAGTTCTGCCTCTTAACAGAGGTAAGGACCACAAGC
CCAGACGACACATATGGCTGAGTGAAATCAACAACCTTTGTTCGATTTGTGATGATAGTTACAT
CGCCTACCACAGCATCAAAGTC
Conservation Information
Conserved circRNAs osi_circ_005691*
PMCS 0.33085033
Functional Information
Coding potential Y
Potential coding position 29567672-29567824(+)
29567735-29567876(-)
Potential amino acid sequence MFKHPNYCPYDKKEQSSDGPHLDREWLQKGPSTRVLPLNRGKDHKPRRHIWLSEINNLCSICDD
SYIAYHSIKVQNTVISCFAGGPRNSSLILCSSIQTTVPMIRKNSPVTVHILIVNGCRKAHPPEF
CLLTEVRTTSPDDTYG*(+)
MWTVTGLFFLIIGTVVWMLEHRINDEFRGPPAKQLITVFWTLMLW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017