Detail information of BGIOSGA016994_circ_g.3


General Information
CircRNA Name BGIOSGA016994_circ_g.3
ID in PlantcircBase osi_circ_014707
Alias Chr04:30238433_30238578(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28345898-28346043  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRI2
Parent gene BGIOSGA016994
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.2 BGIOSGA016994_circ_g.4 BGIOSGA014479_circ_g.1 BGIOSGA016995_circ_g.1 BGIOSGA014476_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.1 BGIOSGA014475_circ_g.2 BGIOSGA014474_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGACTTGAGAAACTCTTGGTTAAAAAAAGAAAGATATGAGAAACTCAAGCTGCTTCCTGCCTC
ACAAGATTAccttgaacttaaagttaccttaaaacattctgaataaaatgccttttggtgtcat
attacttataagtcggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAACTTAAAGTTACCTTAAAACATTCTGAATAAAATGCCTTTTGGTGTCATATTACTTAT
AAGTCGGTCGAGACTTGAGAAACTCTTGGTTAAAAAAAGAAAGATATGAGAAACTCAAGCTGCT
TCCTGCCTCACAAGATTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021