Detail information of 4_circ_ag.11


General Information
CircRNA Name 4_circ_ag.11
ID in PlantcircBase ath_circ_033400
Alias NA
Organism Arabidpsis thaliana
Position chr4: 14247799-14252731  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.12 4_circ_ag.13 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 5
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCGCTTTTGCTCATATTTTGGGTTCTCTTCACAGAGCAAAGTCGACGGGATGATCTAGAATC
GCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGggtcttaaggctgttgacaagaagcaaa
agtatgacaaaatttgtgagaagaagatatcaactcctattgaggtctatttccctctactgtg
tgagtgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGATATCAACTC
CTATTGAGGTCTATTTCCCTCTACTGTGTGAGTGAATTGTTTTTTGTTAATCCTCATTCAACTG
AATAATATCCCATCCTTTGTAGGTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTT
CATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTTTTC
GTGATTTATTCTCACGGGAAGGTACTTTGAGAAAGACATCCCTCCATCATTTTTATAATCCTCT
CTGCTAGCATCAGTTATCTACCTAGCTCACTTAAACGTTTTCTTCTTTGCAGGATATGAGTTTG
ACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTCTCA
GGTATAGTTTATCAATACCATTTGTTATTTTTTTTTCTCCAGGTGTATGCATATTTTGTCTTGT
TCATAGAGAAGATTTCCTGGGGAGAAGTTTTACTTGGTTTTGCTATTTTTTAGTTTTGGTGCTA
AATATAGATATGCCTGTCTTCCTAACAATAAACTGTCATGCTGCAGGCCGTTCCTGGGTCTAGT
AATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGTCAGCTCGAGTTATAAATTTTAA
TTGTGTCACTTTCTGATTAATTTTGTAATAGTATATGATGTGTTTTTTGTTTTCTCTCGACTTT
CACACTGGACTCAACTGGCATAGAGTGTTTGGCTGATTTAGTTTCCCGTTGCAACTGTTTATTT
CAATATCTTGATGCTAACTCTCCGTTTGGCAGGAGGAACTAAGATTTCACATGAAGCCCAAGTC
TCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTAATACCGCTGTAGGGA
GGAGTCTGGGTTTTGATCAAGTCCACAAGAATGTACGTGCTTATTCATTTGCCTCTTCCAAATA
AATGTTGTATCCTGCAACCCTCCCCCTTGTGTTAGCATCTCATGCCTGCATCTGTGTTGCTTCA
GAGTTCTGCATGGTTCTCTGCTTAAAGCTTTTACCTGTTTTGCATGGTCAATTGTCATCAACGA
GCTCTATATTGTGATATGAACTACATATAGCATAAATGATTAAAACACGATACTGATCATCACG
AAATATGCTCTTGACCATTATTTTACTGAAAACCCATTGCAGATGAACATGCCATCATCCACTT
CATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAAATTCTGGGTTTGG
GAGCGGGAATAAAACCGGCGGTTGGACTTCACCATTCATGTCACCGGGGAAATGATGCAAAAAA
AGTTGGAGTATATCATTCATCTGATCTGCTGAGCAAGATTATGTGTGCCTTTGGGTCTAAACTG
TGATTTCTGCAGTGAAAAGCTCTAGACTGAGGTTGAAGATCTGAATGGAGTTTTTCCATGAACA
GCTTACTGTTTGACAAAAGGCATGAAGATTATGTTTGCTTTCCTTCAAGATTCTCACAAATGAC
TGACTTCAACCTTTGTATAAAATCTTGCAACCGGGCGTGTAATTTGGTTCTTGTGATTCATTCT
CCCAAGTTTTCTTCTATAAAACTTTGTTCGTATTTCTGTACGTAGTTCCCTGTGTTGGGGCATA
ACCTGGGTTTGCTGTGTCATCAACATTGTTTGCAGAAAATCAAGAGCAAAGCATGAGCAGCTTC
AGCAGAGATGCCTTCAAAGGCTTGAGTCAAGAGTTGCTTGTGGCAGGGACATGTCACCATCAAG
CTAATGTGCAGCTGACGAGAACGTAAAAGGATAAGCTATGGCTAGCTTCTGGAATGCTCCGAGA
AACACTTCCCCCTTTTTTTTTCTCTGAATTTCCTATTCAGTTTAATGGTATTCTGTGTTTGATT
TTTCTTACTCGATTTTGTGCATTGAAAAAAATTATATCAAAAAGCTTGACTTGATCCAAACATG
CATTTTCAATTGCTATTATTAAAAAAAAAAAACGTATAAAATTGTAGTCTCAATATTGAAATAC
AAACACCTAGAATTGATCGATTTGGTAGAGAACTAGTTAGTGGATTAAATTTGGGTTGGCTGAT
TTTCGAGCCATAAACTATTTCGATTCTCAGCTTTCACACCCGGACTTTTGGGCCTTTAAATTTC
CACCATCAACTTTCATATTCCCAAAATTACATCATCTATTTTTGGATTCATGCTTAAACATACA
TTTCCAATTGAACCATTCATTTAACCGGGATTAACCACAAATCCGCGTTTACTGTACCGCGATT
GCGATTAACCCAACTAATACCCAGACCCGTTAAGAAAACGACGTCGTTTTCATTTCGTTTAACT
CATCAAAAAGAGAAAGAAAACGACGTCGTTTTCATTCTTCTTCTTTAACTCTCAAATCGATTTA
GTCGTTCTTCTTTAATCTCGACACTGTGAAATTAGGGTTCTTGAGAGAGAAAGACAAAAGGGGA
TTTGGGGTTTTCTTCTTCGGTTCGAATTTTTGGGTCTCGATTTGGGTTTCGAATAGGGAGAAAT
GAAGAATTGGTGGGAGGAAAGATTGATTTACCAAAGCGATCCAGATGACCCCGATTTCGAACCT
CCAGAGAGTGACATTGAAGCCGACGATGGAAGTGATAGTGGTGATAGCGGAGTCGAGGAGGACG
AAGCCACCAGAATCGAGGGAGAGGACGTCGGGATAGATGGAGACAGAGCTTCTGATGGAGAGGA
AAATAGAGAAGACGATGGTGACATAGCGTCTGATGGAGACGTCAATCTAGAAGACGATGGAGAC
AGAGATGAAAGTCAAAAGAAGAGGACTACCAAATCGATTTGAGAGTTAAAGAAGAAGAATGAAA
ACGACGTCGTTTTCTTAACGGGTCTGGGTATTAGTCGGGTTAATCACAATCGCGGTACAGTAAA
CGCGGATTTGTGGTTAATCCCGGTTAAATGAATGGTTCAATTGAAAATGTATGTTTAATCATGA
ATTCGAAAGTAGATGATGTAATTTTGAGGAATATGAAAATTGATGGTGGAAATTTAAGGGCCCA
AAAATCCGGGAGTGAAAACTAAGAATCGAAATAGTTTATGACTCGAAAATCAGCCAACCCATTA
AATTTTCGAACCTTCATCATTTTGCAGACCCCAAAAACGGAAATCATCAAATCATCCACCGTGC
CAGCGTGACATTACAAAATCACGTAAATACCCTCGTGTTTGTTTATAAGGTAAAAAAAGATTGG
CGGACCCAAAATGGTGCAGTAGTTAGGTGTACAAATTTTTTTTTGAAGGATCACTACTACGGCT
CAAACAAGCCTGGGTCCATGTCACTACCACCGATGTCAGTCAAACAAAAATAATAATATATGTT
TTTAAGTTCCTCTAATTTCAATCTTCTAAACAACAACCCTAAATCCTTATCTCTATCCTTGCGC
TTGATCCAGATTCGGTTCTGATTGGAGCTGCCATGGAACGCATCATCGGCGGCAAGTACAAGCT
CGGACGGAAGATCGGCGGTGGTTCGTTCGGAGAGATTTTTCTAGGTTTTGTGTTCTCCTCTGTT
CTTGTCCCTTTGGTTTTCCGAGTTTGCTTTTTTATTTGAAATTGACGCTCTTCTCTTCTGTTTG
TTGTTTTCGCAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGATCGTAAGTCCCAG
CTCAATTTGCCTTGAGACGAATTGAATCCATCCAATCTGGAGATTTGATTTGGATCTGCTATGT
CTCTTAATTGATTTTGTTTGAATTGCTTTACTCTAAAATTGAGCAAGGTTTTAAACTCGGTGCT
TTTTAGCTGCAATATATTCTTCAAGCTAACACTTGTTTTTAATTCAATCATTTTCTCTTGCAGG
AGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTATATAGAATTCTTGAAGG
AGGAAGTATGATTCTCTTTCCTCTCTTTTCTCAGTTGTTGGACATTGGAGGGATTCATTAGCAG
TACAATACTAATTTTTATGTTATGTGTCAGGTGGAATTCCGCGCATAAAATGGTTTGGAGTTGA
TGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTAC
TGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGGTATGGCATGACT
TTCAACTATTCATTAGGCTATTTATAATATCTGTTGACTTATACATTGATTATCTAATGTGCTT
CCGATTTTCTTATCCCGCTGTTACAGCTAACAAGAATAGAATTTGTACATTCGAAAGGATATCT
GCATAGAGATATTAAACCCGATAACTTCCTCATGGGCCTAGGTCGGAAAGCAAATCAGGTATAT
TTCTGCAACTTCTTATCTTCATCAGATGCCATAAGTAGAGTATGGTATGATTGATAAGTCTCAT
TTTTCAGGTTTATCTAATTGACTTTGGACTTGCCAAAAGATATCGGGATGCCAACACCAACCGC
CACATCCCTTACAGGTATTGTGGCCTTGGTTCAATATACAGATTGTAAATGATCTATCTGTTTT
TAAGTTTTACGGTCACGTTAATCATTATACAACTTATTTCCTTTATTCGGCTATATTCAGGGAA
AACAAGAATTTAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGAATTGGTAAGA
AATGCTGGCATTCTTTATCCTTATGTAAAAGTAAATCGCTTTTGCTCATATTTTGGGTTCTCTT
CACAGAGCAAAGTCGACGGGATGATCTAGAATCGCTGGGATATGTGCTTCTGTATTTCCTAAGA
GGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.167298099
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017