Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G28880_circ_g.3 |
ID in PlantcircBase | ath_circ_033407 |
Alias | 4:14251328-14252272 |
Organism | Arabidpsis thaliana |
Position | chr4: 14251328-14252272 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT4G28880 |
Parent gene annotation |
Ckl3 |
Parent gene strand | + |
Alternative splicing | AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12 |
Support reads | 1/1/2/4/1 |
Tissues | seedling;root;leaf;flower |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT4G28880.4:5 AT4G28880.2:5 AT4G28880.3:5 AT4G28880.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.292185895 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |