Detail information of 4_circ_ag.7


General Information
CircRNA Name 4_circ_ag.7
ID in PlantcircBase ath_circ_033396
Alias NA
Organism Arabidpsis thaliana
Position chr4: 14247445-14252420  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 158
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTATGATTGATAAGTCTCATTTTTCAGGTTTATCTAATTGACTTTGGACTTGCCAAAAGATA
TCGGGATGCCAACACCAACCGCCACATCCCTTACAGggaaaacaagaatttaacaggaactgca
cgatatgcaagttgcaatacacatcttggtattggtaaggaatgctgccacttttttctcccct
ttgtgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAAACAAGAATTTAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGTATTGGT
AAGGAATGCTGCCACTTTTTTCTCCCCTTTGTGAAGTAAAGTTTTTGCTCACATATTTCGATTT
CTCTTTCGCAGAGCAAGGTAGACGGGATGACCTAGAGTCTCTTGGATATGTGCTTCTGTACTTC
TTAAGAGGAAGGTGTGTTGACTTTTTGACTTGAAAGAACCTAGTTAACATTGTGTTTTTGGCAG
GGTATTGTTTTTCCTTGTTTGAGATTTACTTAACCGTTTTCTTGCTTTACATTTTGTTCCTATT
TTAATGAACCTCCTTTTCTAGCCTTCCATGGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAG
TATGACAAAATTTGTGAGAAGAAGATATCAACTCCTATTGAGGTCTATTTCCCTCTACTGTGTG
AGTGAATTGTTTTTTGTTAATCCTCATTCAACTGAATAATATCCCATCCTTTGTAGGTTCTATG
CAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTCATTATTGCCACACACTGACATTTGATCAA
CGCCCTGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTCTCACGGGAAGGTACTTTGA
GAAAGACATCCCTCCATCATTTTTATAATCCTCTCTGCTAGCATCAGTTATCTACCTAGCTCAC
TTAAACGTTTTCTTCTTTGCAGGATATGAGTTTGACTATATATATGACTGGACTATTATAAAGT
ATCAGCAATCACAGAAAACTAGAAGTCAGTCTCAGGTATAGTTTATCAATACCATTTGTTATTT
TTTTTTCTCCAGGTGTATGCATATTTTGTCTTGTTCATAGAGAAGATTTCCTGGGGAGAAGTTT
TACTTGGTTTTGCTATTTTTTAGTTTTGGTGCTAAATATAGATATGCCTGTCTTCCTAACAATA
AACTGTCATGCTGCAGGCCGTTCCTGGGTCTAGTAATGCTCGTGCAATACCAATGGACACAAGC
AATCATCGAGGTCAGCTCGAGTTATAAATTTTAATTGTGTCACTTTCTGATTAATTTTGTAATA
GTATATGATGTGTTTTTTGTTTTCTCTCGACTTTCACACTGGACTCAACTGGCATAGAGTGTTT
GGCTGATTTAGTTTCCCGTTGCAACTGTTTATTTCAATATCTTGATGCTAACTCTCCGTTTGGC
AGGAGGAACTAAGATTTCACATGAAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGT
GGTCCAAGCCCACAGATTAATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGA
ATGTACGTGCTTATTCATTTGCCTCTTCCAAATAAATGTTGTATCCTGCAACCCTCCCCCTTGT
GTTAGCATCTCATGCCTGCATCTGTGTTGCTTCAGAGTTCTGCATGGTTCTCTGCTTAAAGCTT
TTACCTGTTTTGCATGGTCAATTGTCATCAACGAGCTCTATATTGTGATATGAACTACATATAG
CATAAATGATTAAAACACGATACTGATCATCACGAAATATGCTCTTGACCATTATTTTACTGAA
AACCCATTGCAGATGAACATGCCATCATCCACTTCATTATCTCCTGCGGGTACCTCAAAAAGAA
ATGTCAGACCCGAAACCTCAAATTCTGGGTTTGGGAGCGGGAATAAAACCGGCGGTTGGACTTC
ACCATTCATGTCACCGGGGAAATGATGCAAAAAAAGTTGGAGTATATCATTCATCTGATCTGCT
GAGCAAGATTATGTGTGCCTTTGGGTCTAAACTGTGATTTCTGCAGTGAAAAGCTCTAGACTGA
GGTTGAAGATCTGAATGGAGTTTTTCCATGAACAGCTTACTGTTTGACAAAAGGCATGAAGATT
ATGTTTGCTTTCCTTCAAGATTCTCACAAATGACTGACTTCAACCTTTGTATAAAATCTTGCAA
CCGGGCGTGTAATTTGGTTCTTGTGATTCATTCTCCCAAGTTTTCTTCTATAAAACTTTGTTCG
TATTTCTGTACGTAGTTCCCTGTGTTGGGGCATAACCTGGGTTTGCTGTGTCATCAACATTGTT
TGCAGAAAATCAAGAGCAAAGCATGAGCAGCTTCAGCAGAGATGCCTTCAAAGGCTTGAGTCAA
GAGTTGCTTGTGGCAGGGACATGTCACCATCAAGCTAATGTGCAGCTGACGAGAACGTAAAAGG
ATAAGCTATGGCTAGCTTCTGGAATGCTCCGAGAAACACTTCCCCCTTTTTTTTTCTCTGAATT
TCCTATTCAGTTTAATGGTATTCTGTGTTTGATTTTTCTTACTCGATTTTGTGCATTGAAAAAA
ATTATATCAAAAAGCTTGACTTGATCCAAACATGCATTTTCAATTGCTATTATTAAAAAAAAAA
AACGTATAAAATTGTAGTCTCAATATTGAAATACAAACACCTAGAATTGATCGATTTGGTAGAG
AACTAGTTAGTGGATTAAATTTGGGTTGGCTGATTTTCGAGCCATAAACTATTTCGATTCTCAG
CTTTCACACCCGGACTTTTGGGCCTTTAAATTTCCACCATCAACTTTCATATTCCCAAAATTAC
ATCATCTATTTTTGGATTCATGCTTAAACATACATTTCCAATTGAACCATTCATTTAACCGGGA
TTAACCACAAATCCGCGTTTACTGTACCGCGATTGCGATTAACCCAACTAATACCCAGACCCGT
TAAGAAAACGACGTCGTTTTCATTTCGTTTAACTCATCAAAAAGAGAAAGAAAACGACGTCGTT
TTCATTCTTCTTCTTTAACTCTCAAATCGATTTAGTCGTTCTTCTTTAATCTCGACACTGTGAA
ATTAGGGTTCTTGAGAGAGAAAGACAAAAGGGGATTTGGGGTTTTCTTCTTCGGTTCGAATTTT
TGGGTCTCGATTTGGGTTTCGAATAGGGAGAAATGAAGAATTGGTGGGAGGAAAGATTGATTTA
CCAAAGCGATCCAGATGACCCCGATTTCGAACCTCCAGAGAGTGACATTGAAGCCGACGATGGA
AGTGATAGTGGTGATAGCGGAGTCGAGGAGGACGAAGCCACCAGAATCGAGGGAGAGGACGTCG
GGATAGATGGAGACAGAGCTTCTGATGGAGAGGAAAATAGAGAAGACGATGGTGACATAGCGTC
TGATGGAGACGTCAATCTAGAAGACGATGGAGACAGAGATGAAAGTCAAAAGAAGAGGACTACC
AAATCGATTTGAGAGTTAAAGAAGAAGAATGAAAACGACGTCGTTTTCTTAACGGGTCTGGGTA
TTAGTCGGGTTAATCACAATCGCGGTACAGTAAACGCGGATTTGTGGTTAATCCCGGTTAAATG
AATGGTTCAATTGAAAATGTATGTTTAATCATGAATTCGAAAGTAGATGATGTAATTTTGAGGA
ATATGAAAATTGATGGTGGAAATTTAAGGGCCCAAAAATCCGGGAGTGAAAACTAAGAATCGAA
ATAGTTTATGACTCGAAAATCAGCCAACCCATTAAATTTTCGAACCTTCATCATTTTGCAGACC
CCAAAAACGGAAATCATCAAATCATCCACCGTGCCAGCGTGACATTACAAAATCACGTAAATAC
CCTCGTGTTTGTTTATAAGGTAAAAAAAGATTGGCGGACCCAAAATGGTGCAGTAGTTAGGTGT
ACAAATTTTTTTTTGAAGGATCACTACTACGGCTCAAACAAGCCTGGGTCCATGTCACTACCAC
CGATGTCAGTCAAACAAAAATAATAATATATGTTTTTAAGTTCCTCTAATTTCAATCTTCTAAA
CAACAACCCTAAATCCTTATCTCTATCCTTGCGCTTGATCCAGATTCGGTTCTGATTGGAGCTG
CCATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATCGGCGGTGGTTCGTTCGG
AGAGATTTTTCTAGGTTTTGTGTTCTCCTCTGTTCTTGTCCCTTTGGTTTTCCGAGTTTGCTTT
TTTATTTGAAATTGACGCTCTTCTCTTCTGTTTGTTGTTTTCGCAGCTACGCACGTCGATACCT
TCGAGATCGTAGCTGTTAAGATCGTAAGTCCCAGCTCAATTTGCCTTGAGACGAATTGAATCCA
TCCAATCTGGAGATTTGATTTGGATCTGCTATGTCTCTTAATTGATTTTGTTTGAATTGCTTTA
CTCTAAAATTGAGCAAGGTTTTAAACTCGGTGCTTTTTAGCTGCAATATATTCTTCAAGCTAAC
ACTTGTTTTTAATTCAATCATTTTCTCTTGCAGGAGAACAGTAAAACAAAGCATCCTCAACTTC
TCTATGAAGCTAAGCTATATAGAATTCTTGAAGGAGGAAGTATGATTCTCTTTCCTCTCTTTTC
TCAGTTGTTGGACATTGGAGGGATTCATTAGCAGTACAATACTAATTTTTATGTTATGTGTCAG
GTGGAATTCCGCGCATAAAATGGTTTGGAGTTGATGGAACAGAGAATGCTTTAGTGATGGATTT
GCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTC
TTGATGTTGGCTGATCAAATGGTATGGCATGACTTTCAACTATTCATTAGGCTATTTATAATAT
CTGTTGACTTATACATTGATTATCTAATGTGCTTCCGATTTTCTTATCCCGCTGTTACAGCTAA
CAAGAATAGAATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATAACTTCCT
CATGGGCCTAGGTCGGAAAGCAAATCAGGTATATTTCTGCAACTTCTTATCTTCATCAGATGCC
ATAAGTAGAGTATGGTATGATTGATAAGTCTCATTTTTCAGGTTTATCTAATTGACTTTGGACT
TGCCAAAAGATATCGGGATGCCAACACCAACCGCCACATCCCTTACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.443304376
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017