Detail information of 4_circ_ag.4


General Information
CircRNA Name 4_circ_ag.4
ID in PlantcircBase ath_circ_033393
Alias 4:14246887-14251835
Organism Arabidpsis thaliana
Position chr4: 14246887-14251835  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 1
Tissues root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTTTTAATTCAATCATTTTCTCTTGCAGGAGAACAGTAAAACAAAGCATCCTCAACTTCTCT
ATGAAGCTAAGCTATATAGAATTCTTGAAGGAGGAAgtggaattccgcgcataagatggtttgg
agttgatggaacagagaatgctttagtgatggatttgctcggtccaagtctcgaagatcttttc
gtctactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAATTCCGCGCATAAGATGGTTTGGAGTTGATGGAACAGAGAATGCTTTAGTGATGGATTT
GCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGAAAATTTTCACCAAAGACGGTC
TTGATGTTGGCTGATCAAATGGTATGGCATGAGTTTTAATCACATTTATTGCGTCTGGTTCTGT
TTAAATACTAATCATTTCTCTTGAGTTATACATTTATCATCTAATGTGCTTATGATTTTCTTAT
TCCGATTTTACAGCTAACTAGAATAGAATATGTACATTCCAAAGGATATCTGCATAGAGATATA
AAACCAGATAACTTTCTCATGGGCCTAGGCCGCAAAGCGAATCAGGTTTATCTAATTGACTTTG
GACTGGCCAAAAGATATCGTGATGCCAACACCAACCGCCACATCCCTTATAGGTATTTGTGGCC
ATGGTTCATTATATTGTGTCTACCATCTGGAGGTGGTAAATTATCTTATCTGTTATAAGTTTTT
AAGGTCACATTATACAACTTATTACCTTTTATTTGGTTGTATTCAGGGAAAACAAGAATTTAAC
AGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGTATTGGTAAGGAATGCTGCCACTTT
TTTCTCCCCTTTGTGAAGTAAAGTTTTTGCTCACATATTTCGATTTCTCTTTCGCAGAGCAAGG
TAGACGGGATGACCTAGAGTCTCTTGGATATGTGCTTCTGTACTTCTTAAGAGGAAGGTGTGTT
GACTTTTTGACTTGAAAGAACCTAGTTAACATTGTGTTTTTGGCAGGGTATTGTTTTTCCTTGT
TTGAGATTTACTTAACCGTTTTCTTGCTTTACATTTTGTTCCTATTTTAATGAACCTCCTTTTC
TAGCCTTCCATGGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAG
AAGAAGATATCAACTCCTATTGAGGTCTATTTCCCTCTACTGTGTGAGTGAATTGTTTTTTGTT
AATCCTCATTCAACTGAATAATATCCCATCCTTTGTAGGTTCTATGCAAAAGCCACCCCGTGGA
GTTTGCTTCATATTTTCATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTC
TTGAAGCGGCTTTTTCGTGATTTATTCTCACGGGAAGGTACTTTGAGAAAGACATCCCTCCATC
ATTTTTATAATCCTCTCTGCTAGCATCAGTTATCTACCTAGCTCACTTAAACGTTTTCTTCTTT
GCAGGATATGAGTTTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGAAAA
CTAGAAGTCAGTCTCAGGTATAGTTTATCAATACCATTTGTTATTTTTTTTTCTCCAGGTGTAT
GCATATTTTGTCTTGTTCATAGAGAAGATTTCCTGGGGAGAAGTTTTACTTGGTTTTGCTATTT
TTTAGTTTTGGTGCTAAATATAGATATGCCTGTCTTCCTAACAATAAACTGTCATGCTGCAGGC
CGTTCCTGGGTCTAGTAATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGTCAGCTC
GAGTTATAAATTTTAATTGTGTCACTTTCTGATTAATTTTGTAATAGTATATGATGTGTTTTTT
GTTTTCTCTCGACTTTCACACTGGACTCAACTGGCATAGAGTGTTTGGCTGATTTAGTTTCCCG
TTGCAACTGTTTATTTCAATATCTTGATGCTAACTCTCCGTTTGGCAGGAGGAACTAAGATTTC
ACATGAAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATT
AATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAATGTACGTGCTTATTCAT
TTGCCTCTTCCAAATAAATGTTGTATCCTGCAACCCTCCCCCTTGTGTTAGCATCTCATGCCTG
CATCTGTGTTGCTTCAGAGTTCTGCATGGTTCTCTGCTTAAAGCTTTTACCTGTTTTGCATGGT
CAATTGTCATCAACGAGCTCTATATTGTGATATGAACTACATATAGCATAAATGATTAAAACAC
GATACTGATCATCACGAAATATGCTCTTGACCATTATTTTACTGAAAACCCATTGCAGATGAAC
ATGCCATCATCCACTTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCT
CAAATTCTGGGTTTGGGAGCGGGAATAAAACCGGCGGTTGGACTTCACCATTCATGTCACCGGG
GAAATGATGCAAAAAAAGTTGGAGTATATCATTCATCTGATCTGCTGAGCAAGATTATGTGTGC
CTTTGGGTCTAAACTGTGATTTCTGCAGTGAAAAGCTCTAGACTGAGGTTGAAGATCTGAATGG
AGTTTTTCCATGAACAGCTTACTGTTTGACAAAAGGCATGAAGATTATGTTTGCTTTCCTTCAA
GATTCTCACAAATGACTGACTTCAACCTTTGTATAAAATCTTGCAACCGGGCGTGTAATTTGGT
TCTTGTGATTCATTCTCCCAAGTTTTCTTCTATAAAACTTTGTTCGTATTTCTGTACGTAGTTC
CCTGTGTTGGGGCATAACCTGGGTTTGCTGTGTCATCAACATTGTTTGCAGAAAATCAAGAGCA
AAGCATGAGCAGCTTCAGCAGAGATGCCTTCAAAGGCTTGAGTCAAGAGTTGCTTGTGGCAGGG
ACATGTCACCATCAAGCTAATGTGCAGCTGACGAGAACGTAAAAGGATAAGCTATGGCTAGCTT
CTGGAATGCTCCGAGAAACACTTCCCCCTTTTTTTTTCTCTGAATTTCCTATTCAGTTTAATGG
TATTCTGTGTTTGATTTTTCTTACTCGATTTTGTGCATTGAAAAAAATTATATCAAAAAGCTTG
ACTTGATCCAAACATGCATTTTCAATTGCTATTATTAAAAAAAAAAAACGTATAAAATTGTAGT
CTCAATATTGAAATACAAACACCTAGAATTGATCGATTTGGTAGAGAACTAGTTAGTGGATTAA
ATTTGGGTTGGCTGATTTTCGAGCCATAAACTATTTCGATTCTCAGCTTTCACACCCGGACTTT
TGGGCCTTTAAATTTCCACCATCAACTTTCATATTCCCAAAATTACATCATCTATTTTTGGATT
CATGCTTAAACATACATTTCCAATTGAACCATTCATTTAACCGGGATTAACCACAAATCCGCGT
TTACTGTACCGCGATTGCGATTAACCCAACTAATACCCAGACCCGTTAAGAAAACGACGTCGTT
TTCATTTCGTTTAACTCATCAAAAAGAGAAAGAAAACGACGTCGTTTTCATTCTTCTTCTTTAA
CTCTCAAATCGATTTAGTCGTTCTTCTTTAATCTCGACACTGTGAAATTAGGGTTCTTGAGAGA
GAAAGACAAAAGGGGATTTGGGGTTTTCTTCTTCGGTTCGAATTTTTGGGTCTCGATTTGGGTT
TCGAATAGGGAGAAATGAAGAATTGGTGGGAGGAAAGATTGATTTACCAAAGCGATCCAGATGA
CCCCGATTTCGAACCTCCAGAGAGTGACATTGAAGCCGACGATGGAAGTGATAGTGGTGATAGC
GGAGTCGAGGAGGACGAAGCCACCAGAATCGAGGGAGAGGACGTCGGGATAGATGGAGACAGAG
CTTCTGATGGAGAGGAAAATAGAGAAGACGATGGTGACATAGCGTCTGATGGAGACGTCAATCT
AGAAGACGATGGAGACAGAGATGAAAGTCAAAAGAAGAGGACTACCAAATCGATTTGAGAGTTA
AAGAAGAAGAATGAAAACGACGTCGTTTTCTTAACGGGTCTGGGTATTAGTCGGGTTAATCACA
ATCGCGGTACAGTAAACGCGGATTTGTGGTTAATCCCGGTTAAATGAATGGTTCAATTGAAAAT
GTATGTTTAATCATGAATTCGAAAGTAGATGATGTAATTTTGAGGAATATGAAAATTGATGGTG
GAAATTTAAGGGCCCAAAAATCCGGGAGTGAAAACTAAGAATCGAAATAGTTTATGACTCGAAA
ATCAGCCAACCCATTAAATTTTCGAACCTTCATCATTTTGCAGACCCCAAAAACGGAAATCATC
AAATCATCCACCGTGCCAGCGTGACATTACAAAATCACGTAAATACCCTCGTGTTTGTTTATAA
GGTAAAAAAAGATTGGCGGACCCAAAATGGTGCAGTAGTTAGGTGTACAAATTTTTTTTTGAAG
GATCACTACTACGGCTCAAACAAGCCTGGGTCCATGTCACTACCACCGATGTCAGTCAAACAAA
AATAATAATATATGTTTTTAAGTTCCTCTAATTTCAATCTTCTAAACAACAACCCTAAATCCTT
ATCTCTATCCTTGCGCTTGATCCAGATTCGGTTCTGATTGGAGCTGCCATGGAACGCATCATCG
GCGGCAAGTACAAGCTCGGACGGAAGATCGGCGGTGGTTCGTTCGGAGAGATTTTTCTAGGTTT
TGTGTTCTCCTCTGTTCTTGTCCCTTTGGTTTTCCGAGTTTGCTTTTTTATTTGAAATTGACGC
TCTTCTCTTCTGTTTGTTGTTTTCGCAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTA
AGATCGTAAGTCCCAGCTCAATTTGCCTTGAGACGAATTGAATCCATCCAATCTGGAGATTTGA
TTTGGATCTGCTATGTCTCTTAATTGATTTTGTTTGAATTGCTTTACTCTAAAATTGAGCAAGG
TTTTAAACTCGGTGCTTTTTAGCTGCAATATATTCTTCAAGCTAACACTTGTTTTTAATTCAAT
CATTTTCTCTTGCAGGAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTAT
ATAGAATTCTTGAAGGAGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.779335563
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020