Detail information of 4_circ_ag.10


General Information
CircRNA Name 4_circ_ag.10
ID in PlantcircBase ath_circ_033399
Alias NA
Organism Arabidpsis thaliana
Position chr4: 14247786-14252731  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 9
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCGCTTTTGCTCATATTTTGGGTTCTCTTCACAGAGCAAAGTCGACGGGATGATCTAGAATC
GCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGccttccatggcagggtcttaaggctgtt
gacaagaagcaaaagtatgacaaaatttgtgagaagaagatatcaactcctattgaggtctatt
tccctcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCCATGGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAG
AAGATATCAACTCCTATTGAGGTCTATTTCCCTCTACTGTGTGAGTGAATTGTTTTTTGTTAAT
CCTCATTCAACTGAATAATATCCCATCCTTTGTAGGTTCTATGCAAAAGCCACCCCGTGGAGTT
TGCTTCATATTTTCATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTG
AAGCGGCTTTTTCGTGATTTATTCTCACGGGAAGGTACTTTGAGAAAGACATCCCTCCATCATT
TTTATAATCCTCTCTGCTAGCATCAGTTATCTACCTAGCTCACTTAAACGTTTTCTTCTTTGCA
GGATATGAGTTTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGAAAACTA
GAAGTCAGTCTCAGGTATAGTTTATCAATACCATTTGTTATTTTTTTTTCTCCAGGTGTATGCA
TATTTTGTCTTGTTCATAGAGAAGATTTCCTGGGGAGAAGTTTTACTTGGTTTTGCTATTTTTT
AGTTTTGGTGCTAAATATAGATATGCCTGTCTTCCTAACAATAAACTGTCATGCTGCAGGCCGT
TCCTGGGTCTAGTAATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGTCAGCTCGAG
TTATAAATTTTAATTGTGTCACTTTCTGATTAATTTTGTAATAGTATATGATGTGTTTTTTGTT
TTCTCTCGACTTTCACACTGGACTCAACTGGCATAGAGTGTTTGGCTGATTTAGTTTCCCGTTG
CAACTGTTTATTTCAATATCTTGATGCTAACTCTCCGTTTGGCAGGAGGAACTAAGATTTCACA
TGAAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTAAT
ACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAATGTACGTGCTTATTCATTTG
CCTCTTCCAAATAAATGTTGTATCCTGCAACCCTCCCCCTTGTGTTAGCATCTCATGCCTGCAT
CTGTGTTGCTTCAGAGTTCTGCATGGTTCTCTGCTTAAAGCTTTTACCTGTTTTGCATGGTCAA
TTGTCATCAACGAGCTCTATATTGTGATATGAACTACATATAGCATAAATGATTAAAACACGAT
ACTGATCATCACGAAATATGCTCTTGACCATTATTTTACTGAAAACCCATTGCAGATGAACATG
CCATCATCCACTTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAA
ATTCTGGGTTTGGGAGCGGGAATAAAACCGGCGGTTGGACTTCACCATTCATGTCACCGGGGAA
ATGATGCAAAAAAAGTTGGAGTATATCATTCATCTGATCTGCTGAGCAAGATTATGTGTGCCTT
TGGGTCTAAACTGTGATTTCTGCAGTGAAAAGCTCTAGACTGAGGTTGAAGATCTGAATGGAGT
TTTTCCATGAACAGCTTACTGTTTGACAAAAGGCATGAAGATTATGTTTGCTTTCCTTCAAGAT
TCTCACAAATGACTGACTTCAACCTTTGTATAAAATCTTGCAACCGGGCGTGTAATTTGGTTCT
TGTGATTCATTCTCCCAAGTTTTCTTCTATAAAACTTTGTTCGTATTTCTGTACGTAGTTCCCT
GTGTTGGGGCATAACCTGGGTTTGCTGTGTCATCAACATTGTTTGCAGAAAATCAAGAGCAAAG
CATGAGCAGCTTCAGCAGAGATGCCTTCAAAGGCTTGAGTCAAGAGTTGCTTGTGGCAGGGACA
TGTCACCATCAAGCTAATGTGCAGCTGACGAGAACGTAAAAGGATAAGCTATGGCTAGCTTCTG
GAATGCTCCGAGAAACACTTCCCCCTTTTTTTTTCTCTGAATTTCCTATTCAGTTTAATGGTAT
TCTGTGTTTGATTTTTCTTACTCGATTTTGTGCATTGAAAAAAATTATATCAAAAAGCTTGACT
TGATCCAAACATGCATTTTCAATTGCTATTATTAAAAAAAAAAAACGTATAAAATTGTAGTCTC
AATATTGAAATACAAACACCTAGAATTGATCGATTTGGTAGAGAACTAGTTAGTGGATTAAATT
TGGGTTGGCTGATTTTCGAGCCATAAACTATTTCGATTCTCAGCTTTCACACCCGGACTTTTGG
GCCTTTAAATTTCCACCATCAACTTTCATATTCCCAAAATTACATCATCTATTTTTGGATTCAT
GCTTAAACATACATTTCCAATTGAACCATTCATTTAACCGGGATTAACCACAAATCCGCGTTTA
CTGTACCGCGATTGCGATTAACCCAACTAATACCCAGACCCGTTAAGAAAACGACGTCGTTTTC
ATTTCGTTTAACTCATCAAAAAGAGAAAGAAAACGACGTCGTTTTCATTCTTCTTCTTTAACTC
TCAAATCGATTTAGTCGTTCTTCTTTAATCTCGACACTGTGAAATTAGGGTTCTTGAGAGAGAA
AGACAAAAGGGGATTTGGGGTTTTCTTCTTCGGTTCGAATTTTTGGGTCTCGATTTGGGTTTCG
AATAGGGAGAAATGAAGAATTGGTGGGAGGAAAGATTGATTTACCAAAGCGATCCAGATGACCC
CGATTTCGAACCTCCAGAGAGTGACATTGAAGCCGACGATGGAAGTGATAGTGGTGATAGCGGA
GTCGAGGAGGACGAAGCCACCAGAATCGAGGGAGAGGACGTCGGGATAGATGGAGACAGAGCTT
CTGATGGAGAGGAAAATAGAGAAGACGATGGTGACATAGCGTCTGATGGAGACGTCAATCTAGA
AGACGATGGAGACAGAGATGAAAGTCAAAAGAAGAGGACTACCAAATCGATTTGAGAGTTAAAG
AAGAAGAATGAAAACGACGTCGTTTTCTTAACGGGTCTGGGTATTAGTCGGGTTAATCACAATC
GCGGTACAGTAAACGCGGATTTGTGGTTAATCCCGGTTAAATGAATGGTTCAATTGAAAATGTA
TGTTTAATCATGAATTCGAAAGTAGATGATGTAATTTTGAGGAATATGAAAATTGATGGTGGAA
ATTTAAGGGCCCAAAAATCCGGGAGTGAAAACTAAGAATCGAAATAGTTTATGACTCGAAAATC
AGCCAACCCATTAAATTTTCGAACCTTCATCATTTTGCAGACCCCAAAAACGGAAATCATCAAA
TCATCCACCGTGCCAGCGTGACATTACAAAATCACGTAAATACCCTCGTGTTTGTTTATAAGGT
AAAAAAAGATTGGCGGACCCAAAATGGTGCAGTAGTTAGGTGTACAAATTTTTTTTTGAAGGAT
CACTACTACGGCTCAAACAAGCCTGGGTCCATGTCACTACCACCGATGTCAGTCAAACAAAAAT
AATAATATATGTTTTTAAGTTCCTCTAATTTCAATCTTCTAAACAACAACCCTAAATCCTTATC
TCTATCCTTGCGCTTGATCCAGATTCGGTTCTGATTGGAGCTGCCATGGAACGCATCATCGGCG
GCAAGTACAAGCTCGGACGGAAGATCGGCGGTGGTTCGTTCGGAGAGATTTTTCTAGGTTTTGT
GTTCTCCTCTGTTCTTGTCCCTTTGGTTTTCCGAGTTTGCTTTTTTATTTGAAATTGACGCTCT
TCTCTTCTGTTTGTTGTTTTCGCAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGA
TCGTAAGTCCCAGCTCAATTTGCCTTGAGACGAATTGAATCCATCCAATCTGGAGATTTGATTT
GGATCTGCTATGTCTCTTAATTGATTTTGTTTGAATTGCTTTACTCTAAAATTGAGCAAGGTTT
TAAACTCGGTGCTTTTTAGCTGCAATATATTCTTCAAGCTAACACTTGTTTTTAATTCAATCAT
TTTCTCTTGCAGGAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTATATA
GAATTCTTGAAGGAGGAAGTATGATTCTCTTTCCTCTCTTTTCTCAGTTGTTGGACATTGGAGG
GATTCATTAGCAGTACAATACTAATTTTTATGTTATGTGTCAGGTGGAATTCCGCGCATAAAAT
GGTTTGGAGTTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGA
TCTTTTCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATG
GTATGGCATGACTTTCAACTATTCATTAGGCTATTTATAATATCTGTTGACTTATACATTGATT
ATCTAATGTGCTTCCGATTTTCTTATCCCGCTGTTACAGCTAACAAGAATAGAATTTGTACATT
CGAAAGGATATCTGCATAGAGATATTAAACCCGATAACTTCCTCATGGGCCTAGGTCGGAAAGC
AAATCAGGTATATTTCTGCAACTTCTTATCTTCATCAGATGCCATAAGTAGAGTATGGTATGAT
TGATAAGTCTCATTTTTCAGGTTTATCTAATTGACTTTGGACTTGCCAAAAGATATCGGGATGC
CAACACCAACCGCCACATCCCTTACAGGTATTGTGGCCTTGGTTCAATATACAGATTGTAAATG
ATCTATCTGTTTTTAAGTTTTACGGTCACGTTAATCATTATACAACTTATTTCCTTTATTCGGC
TATATTCAGGGAAAACAAGAATTTAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTT
GGAATTGGTAAGAAATGCTGGCATTCTTTATCCTTATGTAAAAGTAAATCGCTTTTGCTCATAT
TTTGGGTTCTCTTCACAGAGCAAAGTCGACGGGATGATCTAGAATCGCTGGGATATGTGCTTCT
GTATTTCCTAAGAGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.290813915
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017