Detail information of BGIOSGA014529_circ_g.2


General Information
CircRNA Name BGIOSGA014529_circ_g.2
ID in PlantcircBase osi_circ_014682
Alias Chr04:29187896_29190695(MH63RS2), Chr04:29187896_29190695(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27423609-27426406  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.3 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.7 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.9 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.12 BGIOSGA014529_circ_g.13 BGIOSGA014529_circ_g.14 BGIOSGA014529_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014529-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAACTGTAGGCACAATGAGTTTCCTTTTTGCAAATGGGTTCACTGATTCTGCATAACGTGTCA
AGACTGGAGCACTGGGAAGCAAGGTAGCTCTAGGAAccttgatcatagcaagatcttgatgcat
caagtccacatctgtctccaaaaatgctcgggatgggcctccatccagtaggatccaaataagc
ccttccta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGATCATAGCAAGATCTTGATGCATCAAGTCCACATCTGTCTCCAAAAATGCTCGGGATGG
GCCTCCATCCAGTAGGATCCAAATAAGCCCTTCCTAATTAAATCCACATTTCATAAGCTTTTAC
TCTACCTTAAATGAATAAAGCTTTTACTCCACAATGGAACATTGATAGAAAAATATATACCATG
CATGCTTGAAATACTCTCAGCACAACTTGGTCACGTAGGGCATCAACAATCAGATCACATACCT
GGTCAAGAACCTACAACATAGTTCCAGTTCATTCATTAATAAAACTCAAAATTAAGGATAAAAT
GTAGGTAGCCAGGTATCTCAAGTATGGTTTCCTACTTGATCAATAGTAGGGATAAACATCTCCA
TACGTGCACTTTCAACACTAGCACGGTACAAGGAGAAAAGTAACGAGTCCCGCATATCCCAGAA
TACAGCCCTTGTTCCTGCAAAGTATTGCTTTAGAAACTCATGTGATTGATATATACAATATTGT
GGGTGTTTTCTTATTCTTTCTCCATTCCAGATGAACTAATATCTGGCACTGTTGGTGAACAAAT
GTATGGAATTCAAAATTTGCAGCAATATTATATTATCAGGATCTAATTCTAATAAATATCATGT
ACTTTAGTAAACCATATCTTAATTTAACCAAAGCAGCTCAAGAACAAATAGTGCAACTATACGT
TTCAACATACAACAGCAACTTCATATTCTTGGCAAACCTTTGCTCTTCCAATGATGAATATACA
ACTGAATGAATTCAAAATAGTATCAATGAATTAGCAGCAATTTGACAGCAATTCTAGCAGTAAA
CTACCATGGATTCTGAAGAACTAAATGCAAGCATAACAAAATTTCTAACAGCCTACCTGCCCAA
TTGTCCAAACAAATCTCTAGTATGAAAACGACTGACTACAGTGTACTTAAAAGTTAAATACACT
TGCTTAAAGTTCATTCCATGGATAAGAGCGTAAACTGTAAAGAGCATAAACTATCTAGAATCTT
AGTAGCTCACCAATGAAGTTCAGGATTCTGTCAGTTGTACTCACTGCAGTCCTTCGCACATCAT
CAAATATTGTAAACAACTCATCGATTGATTCTTCAGAAGATAAGTTTTTTGGGAGAGTTTGTCC
ACTAGCAATGCAAGACAAATAGTCTAGCAATCCCACAGCTACAACAAACAAAGCAGAGGGATAA
AGGATAATCATTCATAAGCTTGAGCTTGAGGGATTGAAAAACTCAGCTGAAGGATTAAGCATAG
TATCAATCCAATTAGCAAGCTATCAAAGCTGTATCTGTTGGAACTTGGGAGGTTTAGACTGTCT
ATTATCGCCAGGTTTTTATAGGCACAGCATTGTTGCCTGTTTAAGTTAAAAATATATGAAAGAA
TTAATGCAGATTCTCCTGAAGGTTTTTCCTTCCAGTTCATAGTCAAACTCCCACCCCAAAACTC
TCCCTCATTACCCATGCCATCATGGCCTTCCACTCTTCCATAGTACAGTAGATACCTTGCTATG
AGCTAGGAATAACACTTCACATGTTCCAATAGTATGTAACTCTTGCCCACAGTCTGAAACAAAG
TCCTGGGAATCCATGAATAGAATGATCTTGCAGTTTCTCAAAACAAATGTGCCTAGTTTTGTGT
ATTCCTCTAGAGTAGCATGTCAAACCATATATTAAGCTTGAGTAGGCTTCACTGTTTCAAGCTC
CAATTTAGAGTTTTAGACCTATCCTAACAGACCCCTACTGCCACTAAATGGTATCCCTGTTTTT
TAGGTGATGGAAGATTACGTTGTACCTTACAACCCTTGCATCAACTAGTGATGCGTGCAGCCAT
TACAAGTATCCTATTTTTGTATGATTTCAAAATGGAGTGGAATTCAAGTAAGGGGGAAAATGCC
ATAAACTGGTAACCCAAGTTAAGGAATCCTTGGTGAGTATGAAATTTGGCTAGCCAGAACCTAA
AAACATACACCAAGCTATACCAAATCAATCCAATCCATGGATCTTGATACCAAACGTTCAAGAG
AATTGACATCTCACAGGCTATAACTGCATTTGACGAAGTAGAAAGATAGTAGATAGCAAAGTAG
CCCTTTTGGGAAGCCTTTGCTGCTTTTGCTTGAAATCTACCATGCTGGTTGTGTATGATATGGG
AGTTGTATGCCATCAGACAAATATGGGACCACCACTACCAGAAGCAAGCCATAAAATAGAAAAT
AGCTCCAACTGCTTTCTGAGAGCCCATTCAACATGGAGATCAATAACGCGGATTTACAACTTAT
CAACCAATATAAAAAGTAATAACTGTGTGCAATAGAATAACACGGAAGGACATCTTTGTACAGG
TGGAAACACATTTAGACAGATGGTTACCTGACTGAACTGAGACCCAAGATTGTTTGATACCTTC
TTCTATGTTATCGAGCTGATCCCTAATGAACTGCATAATTTAGAGAATATGAGGATCACAATAG
AACTCGCCCTATGGTGTGGTTATTGACTAAGAGCAGTAGCTTATTTCATCTATTTGACTTCAGA
CTCAAACATACCAACTCATTCAGAAAAGGGACGGAGGGAAAATGTAGTCAGGTCAAAAGACTCA
CTTGAAGAGTGTTGAGTTTCGCACATAATTTAGGAACCGTCAAATTGTTCAATTTATTAGCCAC
CTTCTCTTCAGGAACTGTAGGCACAATGAGTTTCCTTTTTGCAAATGGGTTCACTGATTCTGCA
TAACGTGTCAAGACTGGAGCACTGGGAAGCAAGGTAGCTCTAGGAA
Conservation Information
Conserved circRNAs osa_circ_024931
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021