Detail information of BGIOSGA015140_circ_g.9


General Information
CircRNA Name BGIOSGA015140_circ_g.9
ID in PlantcircBase osi_circ_014333
Alias Chr04:20739454_20740778(ZS97RS2), Chr04:20794995_20796316(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18028574-18029898  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, find_circ
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015140-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGCA
CCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCACctctggtcatagtatctgcatttgggtt
ccaattgttgaagtcacctactaatgctgcagactgcaataggatgaaaatgtcatttttaatt
cttaatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGGTCATAGTATCTGCATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTG
CAATAGGATGAAAATGTCATTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAA
TATATCATTTGTGCTACTGGTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAA
TCACGTACCTGTGCTCCAGGTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGG
AATAATGATATTGAGTTTGATCATTTGATATCCAAGTAGAATATTGTAGGAATTTCTGTAGTAA
TGCGACTTTAATTTTACCTGCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAA
GCCACCTTCATGTTGGTCAATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCA
CCACGCATACCAAAAAAGATATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGAT
ATCAGAAATTAATTTGCTGAGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCC
ACATCCTTTTTGGTATCTCTAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCAC
CTCTATTTTCAAATATTATACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAG
TCAAGATGGTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTG
GTGGTGGGATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTC
AGTCACATTTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACC
TTTATGCTTGCTTCTGCCACTGATGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTAT
CATCAGGTATCTACACAGAACATAGATGGATAGACTCTGCATGAGACACCCAAAAAGAAAAAAA
GGTACATTCTTTTGTGGCAAAGTTGCTAGTTGGAAGACCCAACTTGGTTTTCAGTAGCCCAACA
GCCAGCACAAGGTCACAATGCACAAAACACATGAAACCTGGCATTGCCACTACATCATTTCATC
ACACATTTGGTCAGTGAATGACAACAGCTCGAATTTTATTCCCGGCATTACCTGAGATTCTTCA
GGTTGCTCTTGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAG
GCACCAGCACCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCAC
Conservation Information
Conserved circRNAs osa_circ_023751
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021