Detail information of Os04g0602800_circ_g.8


General Information
CircRNA Name Os04g0602800_circ_g.8
ID in PlantcircBase osa_circ_025085
Alias Os_ciR2187
Organism Oryza sativa
Position chr4: 30421353-30421625  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.1 Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.7 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10
Support reads 6/1
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0602800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGCATTTCAAATGCTATACACAGGTGATTTTGGAATAGGAGATAGTCAAGCATACGGACAAT
GTTATACTGGTCATCAGGATCATGTGTTTGATTCAActgttttgagaaggcgcgaacaaatttc
attttcagtcctctgaagctgttccttttcaagagctcatacctaaaatattggagtttataat
gcagtttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 180
Transcript exons: 30421353-30421422,30421516-30421625
CTGTTTTGAGAAGGCGCGAACAAATTTCATTTTCAGTCCTCTGAAGCTGTTCCTTTTCAAGAGC
TCATACAGGTTTTGACCAAGCATTTCAAATGCTATACACAGGTGATTTTGGAATAGGAGATAGT
CAAGCATACGGACAATGTTATACTGGTCATCAGGATCATGTGTTTGATTCAA

Genomic sequence CTGTTTTGAGAAGGCGCGAACAAATTTCATTTTCAGTCCTCTGAAGCTGTTCCTTTTCAAGAGC
TCATACCTAAAATATTGGAGTTTATAATGCAGTTTGAGGGGGTGGGGGAGAAAATAATGGATGA
ACATAGTAGCAAAAGAAATTCTAAAGTTAACTTACAGGTTTTGACCAAGCATTTCAAATGCTAT
ACACAGGTGATTTTGGAATAGGAGATAGTCAAGCATACGGACAATGTTATACTGGTCATCAGGA
TCATGTGTTTGATTCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.295004151
Functional Information
Coding potential Y
Potential coding position 30421539-30421393(+)
30421582-30421355(-)
Potential amino acid sequence MLYTGDFGIGDSQAYGQCYTGHQDHVFDSTVLRRREQISFSVL*(+)
MLDYLLFQNHLCIAFEMLGQNLYELLKRNSFRGLKMKFVRAFSKQLNQTHDPDDQYNIVRMLDY
LLFQNHLCIAFEMLGQNLYELLKRNSFRGLKMKFVRAFSKQLNQTHDPDDQYNIVRMLDYLLFQ
NHLCIAFEMLGQNLYELLKRNSFRGLKMKFVRAFSKQLNQTHDPDDQYNIVRMLDYLLFQNHLC
IAFEMLGQNLYELLKRNSFRGLKMKFVRAFSKQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017