Plant Circular RNA Database

Detail information of BGIOSGA033301_circ_g.2

			
						 General Information
					
						CircRNA Name
						BGIOSGA033301_circ_g.2
					
						ID in PlantcircBase
						osi_circ_002915
					
						Alias
						10:19249687|19254489
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr10: 19249687-19254489  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA033301						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							BGIOSGA033301_circ_g.1 BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.11 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.14 BGIOSGA033301_circ_ag.15 BGIOSGA033301_circ_ag.16 BGIOSGA033301_circ_ag.17 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA033301-TA:9

General Information
CircRNA Name	BGIOSGA033301_circ_g.2
ID in PlantcircBase	osi_circ_002915
Alias	10:19249687\|19254489
Organism	Oryza sativa ssp. indica
Position	chr10: 19249687-19254489 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA033301
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	BGIOSGA033301_circ_g.1 BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.11 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.14 BGIOSGA033301_circ_ag.15 BGIOSGA033301_circ_ag.16 BGIOSGA033301_circ_ag.17
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA033301-TA:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAGCCGGAGATGGTCGCCGCCGCCGGGGATCGCCTGGATCTCCCCGTGGTGGACCTCGCGTCC
TCCGACCTCCGATCCTCCGCCGAATCCATCCGAAAGgcttgcgtggagtacggattcttctacg
tggtcaaccatggagccgagggattggtggagaaggtgttcgcggagagcagcaagtttttcga
gcagccgc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGTGGAGAAGG
TGTTCGCGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAA
CAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTTGACGCCTCGTCCAAATTCAAA
GGTCTGCGCCTTATGTTTCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCACTGCTCTTCT
ATAGCCAATTTGAGCCTAAGGTGTGTCTAGCTAGGTAACTGTAATGATGGAAGATGACGAGTTG
TATCGGCAAAAGGCAGAACTTGACAAATTAGTCTGTTAGTGTCTGATGATGGAGTATTATTTAG
GCGTACAAGGCTATACAAGTACAAAAATGTCCCAATGCTTGTGAATGATTCCGTTTAGAAATGA
TTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGATCGCACAATCTTCAATTAGTACAAGGCG
AATATAATTCGAGATGAAGCAGATAACTGGATGAGCGCTGAAGAACCATTTACCATTTAACGTA
TCCTCTCTGCCTCTAGTTTGAACAGCCGATACATCTTGTCGATTTTACCTTCTTGTGTTTGTCA
TAATGCAGTCGAGACTTTTGATTGTGATTTGTGATCCAGGAGACCTCAATGAAAATTTCTGTAT
CGGACCTATCAGAAAAGAAGGTTCTCAGAATGATGCTAACCAATGGCCTTCTGAAGGCAATTCC
CCCACCTCTCTTTTTCGTTGTTTCCGTTTCTTCAAGAAAATAAATAAATTATTTCTTTGGGTAC
AGAGAACTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTGTAAGTTATC
ATTTTGCCCATCTCAGCAAAGGAAATTTAACAGCTGTAATGCAATCTACAACAATCAGTCCCTC
ATTGATTCGCTGCATCAGCATTGTGTTTGTGTAATACTTTTATATAACTATTTGTCTCAAATTT
GAATATTCCTATTTATTCGTACCTCTTCCAGGGCTACTGGTAAAAGGATACTCTCTCTAATTGC
TCTGAGTTTGAATCTCGACGCTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCAC
TACCCAGGTAACCGTAGTGCAAGTCCCTTTATAATATGAAATTAGCCCAAAGTTGCATTCTAAT
AATATGCAGCAGAGTGCTAAGTTGAGCATTGTCATTATTGGGGAGCCAATTGAGCTTCTTTTCC
TCCTTACACAAATACACAGTACTTATTGGTTTTGTATGAATAAAAAATAATTTTAAATGTAGGT
GAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAA
CACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGGTACACCATGTTCTCGCAAATTTTGATTC
TCCATCTCAGTTCTGTTCTATTTTGCAGCTAATTGATCATTTAAACAGTATAGGAGTATGCTCA
TAATATTTTATGAGGATGGGATTATTGCCCACCTTTTACCACTTTCAAGCAAAACATTACCTCT
TCCTTAGAAAAGTAGAAATATAATATGCATATTTTTTTGCGCTTATGTTCTGGTTTCTCTCACT
GTTTTGAGTTTGCAGATATGCAGGGAGAAGGATAAGTGCCCCCAGCTTTGGGAAGACGTTCATC
ACATTGAAGGGTAAATAACAATACTTTTTTATGATATTAATGAATAACAATTTCATATATATCA
TTGCTTTGTCTTTTTTCAGAAAATGGATTAAAATCCGGTCTCTACATCCAAACTGGATGTACAC
AGCCCTACATCATATGAAATTGCTTTACACCATTGCTTTGTTCTTAGCTTTCTGGACCTCAGTT
CTGTGTGCTCCTTAGATAATGTCATGTCTTGTGTTATGTATCTGTAGGGCCCTGATTGTTAATA
TCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTACCATATTTTCTTATTTCTATC
AACCTATTGTGTGGTTGCGAGGAAGCCTCATGTATTGTGCTGGCTGTTTTAAATAAGTTCAAAC
AAACTATTACAGTTGCAAGTAGTTGCCCCAAGAACTTTCTGTTTTCTGCAACTCGATATGGTTA
AATATGTTAGAAGGCACAACGCTTTATCAATGATAAATTGGTTAGGCTTGTCAGTATCACGAAC
AAGTTAGACCATGTTTGTGTGGTTCCTTACAAATTCAGATTTCTGTTTTATGACATTATACACT
TCTTTTCCTATTTTATATCTATGGAAAAGAACAATTTTGATTGTTCTCGTTCTTTTGCTGACCT
GTAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGAGTATAACTAA
CAGCTGAAATCAGAAATTCATAACTGAGGAGTTTTAGCTCCTATTGAACTCATGTTGTAAAGTC
GGATGAACTTCTTAGCGGTAAAACCACCATTGATAATATATAGCATTTCTAGTATATAGCATTT
CTCCAACTAAATATTGCATCCTTTTTGGTGCACGTTCTTTCTTACACATGTTTTTCAATTTTTT
AGGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGTTGTTGCAG
TGAGGCATGCCCACCGAGGTCTTCTTCCTCCTCTTAACCTTAGCATTATTGCAGTTCTTTCATG
CTTGCTTCTCACTGTTAGAAATTGATGCATACTCAGGTTCCCACCTATAAGGAGCGGCGACTAT
TTGGAAGAGCGATTGTGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGA
TGTAGAGGCCAGGTTTTAATCTATTTTCTGAGAAAACAAATAATCCTATGTTTTTACATGTGTA
GAGCTTAAGGCCCTGTTTCTTTCAGCTTGGGATTATTATAATCCAGATTATTGAAGTAAGTTGA
AAGAAACAGACAACTTATTGAAGTAGTTTATTATAATCTGGAGTCCAGCTTATTATAATCTGAT
AAGCTCATCTAGGTGAGCTTTTTCCAGATTATTGGGTGAAAAATTACCCACCATGCCACCCCAC
CCTCTTTTTAGACTTGCAAACCCAATAATCTAGGCTCTAATAATCTAGGAAAGAAACAACTAAC
CGCTTATTCTACTACAGATCATAACAATCTAGTTTATAGTAATCTGACTCAATAATCTAGATTA
TAATAATCCCAAGCTGAAAGAAACAGGCCTAAGATTAGTATATCTTCACGTCAGTAAACTTCAG
TGAGCAGCTATTCCGTTAGAGATGGACGGAAACATCTTGATCTTATATTCTTATATATGTAGCC
CATCTGCTGTTGCTGATTTCTCTCGTGTGTTAACACTAGCTTTACTTGTGAGCAAACATGTTTG
CTCTCCACTGTATTTTCTGTTGCCAAAACATCGGTACACAGTTGTTTGTAAAGATTCTCATGAT
GCTTTCACGATAAAGGAAGACACAAAGAAAGTAACTTTGCTCTCAGATCAAGAACTGCCCATTT
GCGTTTGATTGGAGCAAGTTGTATGGTTTCACATTCTGTAAGACTGTAACAAGGGACAAGAGCA
AGAAGTACCTGTGTGTTTTTCTATTGTAATTGAAAATTTTGATGGGGGAAGCGCTGATATATAT
ACTTCTCAAACACATACTTCCTGTGTGTTCTGAAGCTTGTTTTCTACATGTTGCAGCTCCATTT
TTGCCATAGTTTAGTACTCCCTCCGTCCCAAAATAAATGCAGTTTTAGCACTGTTCATATCTAA
CGTTTGACCGTTCGTCTTATTTGAAAAAAATTATGATTAATATTTTTATTGATATTAGATGATA
AAACATAAATAGTACTTTATGTGTGACTATTTTTTAAATATTTTTCATAAAATTTTCAAATAAA
ACGGATGGTCAAAACACTGAACACGAATATTTATGGCTGCACTTATTTTGAGACGGAGGTAGTA
AGCAGCAGCTATAGGTGGACTATTGAGCAGCTCCTGAAGTGAAATGACTTTTTTTTTTGAGAAG
GGTACAACACAGGACGCACACTAACACACACCACACTCACACCACAACACACGCGTGCACGTCC
CTAACACATGCTAGAAATGAGATTGGAGGCACTAGGCCTCAGCGCACGGGAAACGTACAGTCCT
ACTGAACGCGCACGCGTGTGCGTACCCTATTACCTAGACGGGATCAACCGAAGTCAGTCCCAGG
TAAAGAGGGGAAAAAAACCCCCGGACGAGGGATGAGCGTCAAGTCTGGGACTCGAACGCTGGTC
GGCACGGAGCGAGCCACTGGCTCCTGCCACCTGCGCTACGCACGGTCCTCCCTGAAGTGAAATG
ACTGACAACCAGTATCCAGAATTGGGCCTGGTCTGTTCTCTAATTGGCTTTTCATGGGCCTCTC
CTGTACGGCCGTATTTTCTCTCTGCTGGGCTGTAATCTTGTGCGAGATGGGCCATTCCTTTTAA
GAAACGGGCCTTTCGTGGGCCAGGTTTACTGTAGCTGGGCCGTGTGTTGTTTGTCCACTGCTGG
CCCACCTGTCAGTCCAGTCCATGGATACAGACGCCGGAAGTGGATAGCAGCAGAAGCAACAAGC
AGCAAACACTTCCCGGCGGGAGAGGCAGCGGGAAGCCGGAGATGGTCGCCGCCGCCGGGGATCG
CCTGGATCTCCCCGTGGTGGACCTCGCGTCCTCCGACCTCCGATCCTCCGCCGAATCCATCCGA
AAG
						
					

			
		

Sequences
Splice junction sequence	GAAGCCGGAGATGGTCGCCGCCGCCGGGGATCGCCTGGATCTCCCCGTGGTGGACCTCGCGTCC TCCGACCTCCGATCCTCCGCCGAATCCATCCGAAAGgcttgcgtggagtacggattcttctacg tggtcaaccatggagccgagggattggtggagaaggtgttcgcggagagcagcaagtttttcga gcagccgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGTGGAGAAGG TGTTCGCGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGAA CAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTTGACGCCTCGTCCAAATTCAAA GGTCTGCGCCTTATGTTTCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCACTGCTCTTCT ATAGCCAATTTGAGCCTAAGGTGTGTCTAGCTAGGTAACTGTAATGATGGAAGATGACGAGTTG TATCGGCAAAAGGCAGAACTTGACAAATTAGTCTGTTAGTGTCTGATGATGGAGTATTATTTAG GCGTACAAGGCTATACAAGTACAAAAATGTCCCAATGCTTGTGAATGATTCCGTTTAGAAATGA TTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGATCGCACAATCTTCAATTAGTACAAGGCG AATATAATTCGAGATGAAGCAGATAACTGGATGAGCGCTGAAGAACCATTTACCATTTAACGTA TCCTCTCTGCCTCTAGTTTGAACAGCCGATACATCTTGTCGATTTTACCTTCTTGTGTTTGTCA TAATGCAGTCGAGACTTTTGATTGTGATTTGTGATCCAGGAGACCTCAATGAAAATTTCTGTAT CGGACCTATCAGAAAAGAAGGTTCTCAGAATGATGCTAACCAATGGCCTTCTGAAGGCAATTCC CCCACCTCTCTTTTTCGTTGTTTCCGTTTCTTCAAGAAAATAAATAAATTATTTCTTTGGGTAC AGAGAACTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTGTAAGTTATC ATTTTGCCCATCTCAGCAAAGGAAATTTAACAGCTGTAATGCAATCTACAACAATCAGTCCCTC ATTGATTCGCTGCATCAGCATTGTGTTTGTGTAATACTTTTATATAACTATTTGTCTCAAATTT GAATATTCCTATTTATTCGTACCTCTTCCAGGGCTACTGGTAAAAGGATACTCTCTCTAATTGC TCTGAGTTTGAATCTCGACGCTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCAC TACCCAGGTAACCGTAGTGCAAGTCCCTTTATAATATGAAATTAGCCCAAAGTTGCATTCTAAT AATATGCAGCAGAGTGCTAAGTTGAGCATTGTCATTATTGGGGAGCCAATTGAGCTTCTTTTCC TCCTTACACAAATACACAGTACTTATTGGTTTTGTATGAATAAAAAATAATTTTAAATGTAGGT GAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTAA CACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGGTACACCATGTTCTCGCAAATTTTGATTC TCCATCTCAGTTCTGTTCTATTTTGCAGCTAATTGATCATTTAAACAGTATAGGAGTATGCTCA TAATATTTTATGAGGATGGGATTATTGCCCACCTTTTACCACTTTCAAGCAAAACATTACCTCT TCCTTAGAAAAGTAGAAATATAATATGCATATTTTTTTGCGCTTATGTTCTGGTTTCTCTCACT GTTTTGAGTTTGCAGATATGCAGGGAGAAGGATAAGTGCCCCCAGCTTTGGGAAGACGTTCATC ACATTGAAGGGTAAATAACAATACTTTTTTATGATATTAATGAATAACAATTTCATATATATCA TTGCTTTGTCTTTTTTCAGAAAATGGATTAAAATCCGGTCTCTACATCCAAACTGGATGTACAC AGCCCTACATCATATGAAATTGCTTTACACCATTGCTTTGTTCTTAGCTTTCTGGACCTCAGTT CTGTGTGCTCCTTAGATAATGTCATGTCTTGTGTTATGTATCTGTAGGGCCCTGATTGTTAATA TCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTACCATATTTTCTTATTTCTATC AACCTATTGTGTGGTTGCGAGGAAGCCTCATGTATTGTGCTGGCTGTTTTAAATAAGTTCAAAC AAACTATTACAGTTGCAAGTAGTTGCCCCAAGAACTTTCTGTTTTCTGCAACTCGATATGGTTA AATATGTTAGAAGGCACAACGCTTTATCAATGATAAATTGGTTAGGCTTGTCAGTATCACGAAC AAGTTAGACCATGTTTGTGTGGTTCCTTACAAATTCAGATTTCTGTTTTATGACATTATACACT TCTTTTCCTATTTTATATCTATGGAAAAGAACAATTTTGATTGTTCTCGTTCTTTTGCTGACCT GTAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGAGTATAACTAA CAGCTGAAATCAGAAATTCATAACTGAGGAGTTTTAGCTCCTATTGAACTCATGTTGTAAAGTC GGATGAACTTCTTAGCGGTAAAACCACCATTGATAATATATAGCATTTCTAGTATATAGCATTT CTCCAACTAAATATTGCATCCTTTTTGGTGCACGTTCTTTCTTACACATGTTTTTCAATTTTTT AGGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGTTGTTGCAG TGAGGCATGCCCACCGAGGTCTTCTTCCTCCTCTTAACCTTAGCATTATTGCAGTTCTTTCATG CTTGCTTCTCACTGTTAGAAATTGATGCATACTCAGGTTCCCACCTATAAGGAGCGGCGACTAT TTGGAAGAGCGATTGTGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGA TGTAGAGGCCAGGTTTTAATCTATTTTCTGAGAAAACAAATAATCCTATGTTTTTACATGTGTA GAGCTTAAGGCCCTGTTTCTTTCAGCTTGGGATTATTATAATCCAGATTATTGAAGTAAGTTGA AAGAAACAGACAACTTATTGAAGTAGTTTATTATAATCTGGAGTCCAGCTTATTATAATCTGAT AAGCTCATCTAGGTGAGCTTTTTCCAGATTATTGGGTGAAAAATTACCCACCATGCCACCCCAC CCTCTTTTTAGACTTGCAAACCCAATAATCTAGGCTCTAATAATCTAGGAAAGAAACAACTAAC CGCTTATTCTACTACAGATCATAACAATCTAGTTTATAGTAATCTGACTCAATAATCTAGATTA TAATAATCCCAAGCTGAAAGAAACAGGCCTAAGATTAGTATATCTTCACGTCAGTAAACTTCAG TGAGCAGCTATTCCGTTAGAGATGGACGGAAACATCTTGATCTTATATTCTTATATATGTAGCC CATCTGCTGTTGCTGATTTCTCTCGTGTGTTAACACTAGCTTTACTTGTGAGCAAACATGTTTG CTCTCCACTGTATTTTCTGTTGCCAAAACATCGGTACACAGTTGTTTGTAAAGATTCTCATGAT GCTTTCACGATAAAGGAAGACACAAAGAAAGTAACTTTGCTCTCAGATCAAGAACTGCCCATTT GCGTTTGATTGGAGCAAGTTGTATGGTTTCACATTCTGTAAGACTGTAACAAGGGACAAGAGCA AGAAGTACCTGTGTGTTTTTCTATTGTAATTGAAAATTTTGATGGGGGAAGCGCTGATATATAT ACTTCTCAAACACATACTTCCTGTGTGTTCTGAAGCTTGTTTTCTACATGTTGCAGCTCCATTT TTGCCATAGTTTAGTACTCCCTCCGTCCCAAAATAAATGCAGTTTTAGCACTGTTCATATCTAA CGTTTGACCGTTCGTCTTATTTGAAAAAAATTATGATTAATATTTTTATTGATATTAGATGATA AAACATAAATAGTACTTTATGTGTGACTATTTTTTAAATATTTTTCATAAAATTTTCAAATAAA ACGGATGGTCAAAACACTGAACACGAATATTTATGGCTGCACTTATTTTGAGACGGAGGTAGTA AGCAGCAGCTATAGGTGGACTATTGAGCAGCTCCTGAAGTGAAATGACTTTTTTTTTTGAGAAG GGTACAACACAGGACGCACACTAACACACACCACACTCACACCACAACACACGCGTGCACGTCC CTAACACATGCTAGAAATGAGATTGGAGGCACTAGGCCTCAGCGCACGGGAAACGTACAGTCCT ACTGAACGCGCACGCGTGTGCGTACCCTATTACCTAGACGGGATCAACCGAAGTCAGTCCCAGG TAAAGAGGGGAAAAAAACCCCCGGACGAGGGATGAGCGTCAAGTCTGGGACTCGAACGCTGGTC GGCACGGAGCGAGCCACTGGCTCCTGCCACCTGCGCTACGCACGGTCCTCCCTGAAGTGAAATG ACTGACAACCAGTATCCAGAATTGGGCCTGGTCTGTTCTCTAATTGGCTTTTCATGGGCCTCTC CTGTACGGCCGTATTTTCTCTCTGCTGGGCTGTAATCTTGTGCGAGATGGGCCATTCCTTTTAA GAAACGGGCCTTTCGTGGGCCAGGTTTACTGTAGCTGGGCCGTGTGTTGTTTGTCCACTGCTGG CCCACCTGTCAGTCCAGTCCATGGATACAGACGCCGGAAGTGGATAGCAGCAGAAGCAACAAGC AGCAAACACTTCCCGGCGGGAGAGGCAGCGGGAAGCCGGAGATGGTCGCCGCCGCCGGGGATCG CCTGGATCTCCCCGTGGTGGACCTCGCGTCCTCCGACCTCCGATCCTCCGCCGAATCCATCCGA AAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							19249727-19251684(-)
19249799-19254486(+)
						
						Potential amino acid sequence
						
							MVDHVEESVLHASLSDGFGGGSEVGGREVHHGEIQAIPGGGDHLRLPAASPAGKCLLLVASAAI
HFRRLYPWTGRVSLFTNCNNAMQCRPENTISPPL*(-)
MALLRNRNYLGYTPLGADKLDASSKFKGDLNENFCIGPIRKEGSQNDANQWPSEENFPCWKETM
KLYHETALATGKRILSLIALSLNLDAEFFDCPVAFLRLLHYPGEANESDDGNYGASAHSDYGVL
TLVATDGTPGLQICREKDKCPQLWEDVHHIEGALIVNIGDLLQRWTNCVFRSTLHRVVAVGKER
YSSSPWIQTPEVDSSRSNKQQTLPGGRGSGKPEMVAAAGDRLDLPVVDLASSDLRSSAESIRKA
CVEYGFFYVVNHGAEGLVEKVFAESSKFFEQPLGEKMALLRNRNYLGYTPLGADKLDASSKFKG
DLNENFCIGPIRKEGSQNDANQWPSEENFPCWKETMKLYHETALATGKRILSLIALSLNLDAEF
FDCPVAFLRLLHYPGEANESDDGNYGASAHSDYGVLTLVATDGTPGLQICREKDKCPQLWEDVH
HIEGALIVNIGDLLQRWTNCVFRSTLHRVVAVGKERYSSSPWIQTPEVDSSRSNKQQTLPGGRG
SGKPEMVAAAGDRLDLPVVDLASSDLRSSAESIRKACVEYGFFYVVNHGAEGLVEKVFAESSKF
FEQPLGEKMALLRNRNYLGYTPLGADKLDASSKFKGDLNENFCIGPIRKEGSQNDANQWPSEEN
FPCWKETMKLYHETALATGKRILSLIALSLNLDAEFFDCPVAFLRLLHYPGEANESDDGNYGAS
AHSDYGVLTLVATDGTPGLQICREKDKCPQLWEDVHHIEGALIVNIGDLLQRWTNCVFRSTLHR
VVAVGKERYSSSPWIQTPEVDSSRSNKQQTLPGGRGSGKPEMVAAAGDRLDLPVVDLASSDLRS
SAESIRKACVEYGFFYVVNHGAEGLVEKVFAESSKFFEQPLGEKMALLRNRNYLGYTPLGADKL
DASSKFKGDLNENFCIGPIRKEGSQNDANQWPSEENFPCWKETMKLYHETALATGKRILSLIAL
SLNLDAEFFDCPVAFLRLLHYPGEANESDDGNYGASAHSDYGVLTLVATDGTPGLQICREKDKC
PQLWEDVHHIEGALIVNIGDLLQRWTNCVFRSTLHRVVAVGKERYSSSPWIQTPEVDSSRSNKQ
QTLPGGRGSGKPEMVAAAGDRLDLPVVDLASSDLRSSAESIRK(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	19249727-19251684(-) 19249799-19254486(+)
Potential amino acid sequence	MVDHVEESVLHASLSDGFGGGSEVGGREVHHGEIQAIPGGGDHLRLPAASPAGKCLLLVASAAI HFRRLYPWTGRVSLFTNCNNAMQCRPENTISPPL*(-) MALLRNRNYLGYTPLGADKLDASSKFKGDLNENFCIGPIRKEGSQNDANQWPSEENFPCWKETM KLYHETALATGKRILSLIALSLNLDAEFFDCPVAFLRLLHYPGEANESDDGNYGASAHSDYGVL TLVATDGTPGLQICREKDKCPQLWEDVHHIEGALIVNIGDLLQRWTNCVFRSTLHRVVAVGKER YSSSPWIQTPEVDSSRSNKQQTLPGGRGSGKPEMVAAAGDRLDLPVVDLASSDLRSSAESIRKA CVEYGFFYVVNHGAEGLVEKVFAESSKFFEQPLGEKMALLRNRNYLGYTPLGADKLDASSKFKG DLNENFCIGPIRKEGSQNDANQWPSEENFPCWKETMKLYHETALATGKRILSLIALSLNLDAEF FDCPVAFLRLLHYPGEANESDDGNYGASAHSDYGVLTLVATDGTPGLQICREKDKCPQLWEDVH HIEGALIVNIGDLLQRWTNCVFRSTLHRVVAVGKERYSSSPWIQTPEVDSSRSNKQQTLPGGRG SGKPEMVAAAGDRLDLPVVDLASSDLRSSAESIRKACVEYGFFYVVNHGAEGLVEKVFAESSKF FEQPLGEKMALLRNRNYLGYTPLGADKLDASSKFKGDLNENFCIGPIRKEGSQNDANQWPSEEN FPCWKETMKLYHETALATGKRILSLIALSLNLDAEFFDCPVAFLRLLHYPGEANESDDGNYGAS AHSDYGVLTLVATDGTPGLQICREKDKCPQLWEDVHHIEGALIVNIGDLLQRWTNCVFRSTLHR VVAVGKERYSSSPWIQTPEVDSSRSNKQQTLPGGRGSGKPEMVAAAGDRLDLPVVDLASSDLRS SAESIRKACVEYGFFYVVNHGAEGLVEKVFAESSKFFEQPLGEKMALLRNRNYLGYTPLGADKL DASSKFKGDLNENFCIGPIRKEGSQNDANQWPSEENFPCWKETMKLYHETALATGKRILSLIAL SLNLDAEFFDCPVAFLRLLHYPGEANESDDGNYGASAHSDYGVLTLVATDGTPGLQICREKDKC PQLWEDVHHIEGALIVNIGDLLQRWTNCVFRSTLHRVVAVGKERYSSSPWIQTPEVDSSRSNKQ QTLPGGRGSGKPEMVAAAGDRLDLPVVDLASSDLRSSAESIRK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA033301_circ_g.2

Address

Any questions?

Supported by