Detail information of BGIOSGA033301_circ_ag.16


General Information
CircRNA Name BGIOSGA033301_circ_ag.16
ID in PlantcircBase osi_circ_008634
Alias Chr10:22133934_22137939(MH63RS2), Chr10:22133934_22137939(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19256922-19260928  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033301_circ_g.1 BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.2 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.11 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.14 BGIOSGA033301_circ_ag.15 BGIOSGA033301_circ_ag.17
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTAATTGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATCGGTGCCTTCATCC
GCCCATCAGCATTTCTTCGATTATTGCACTACCCAGggtgaaatcaacgagtccgatgatggca
actatggagcatcagctcactcagattatggaatactaacccttctagcaacagatggcattcc
tgggctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAAATCAACGAGTCCGATGATGGCAACTATGGAGCATCAGCTCACTCAGATTATGGAATAC
TAACCCTTCTAGCAACAGATGGCATTCCTGGGCTGCAGGTACACCATGTTCTTCACATATATTA
ATTCACCAATTTCAATTCTGTTCTCTTTTCCAGCTAATCAATCATGTAGACAAATACATGCTCA
GAAGGTTTGGTGAGAATGGGGTTATGTGATCACCTTTTACCACTTTCAAGCAAAACAATACTTT
CCTGTTTAGAAAAGCAGAAAAATAATATGTATTCTTTATTTTTGCATTTATATTCTAGTTTTCT
CACTGTTGTGCATTTGCAGATATGCAAGGAGAAGGATAGGCATCCCCAGCTCTGGGAAGATGTT
CATCACATCGATGGGTAAATAGTAAAATACTTTTTGGTGATATTAATGAATAACAATTCCAAAT
ATACTGTTGCTTTGCTCTTAGCTCTCTGGATCACTGTCTTGTGTGCTCCTTAGATAACCAGGTC
TTGTGTACAGGGCTCTGATTATTAACATTGGCGATTTGCTAGAAAGGTGGACAAACTGTGTTTT
CAGGTACCATCCTTTTGTACTTCAATTGATCCATTATGTGGTTGTGACGAAGCCTCATGTGCTG
TGGTCACTGTTACGAAAGTTCAAATAAACCAGCTACAGTTGTGAGTAGTTTCACCAAAAACTTT
CTGTTTTTTTGCAACTTGATATGGTTAAATATGCTTGAAAGCACAATGCTTTCTAAGTTGGTTT
AGGCTTGTCAATATCATGAGCAGGATAGATCATGTCCATGTTGTTTCTGAAATTCTACAGGTCT
TTTTGAGTTCTGAAATTTAAGGAAAAAGCCTTGTGTATGAATTTTAATTATTCTTGCTCTTTTG
CTGACTTGTAGGTCTACACTGCATCGTGTTGTGGCAGTTGGTAAAGAGCGATACTCTGTGAGTA
TTACTAACCACTGAAATTAGAATTTCATTATTGAGGGGTTTCAGCTCATTGAATTATTGTTATT
TTTTGTGGAAGTTCCCATTGAATTCATGTTCTAGAGCTGGATGAACCCCGCTTTAAGGGAAAAC
TAATACTGATAATATATAGCACTTCAGTGACTAAATTGTGTGCTTAACTTCAGGACCTTTCTGG
TGGACATTCTTTCTTACGCAAGTGCTTTTTTTTTTTTTTTTTCAATTTGTCAGGTGGCTTTCTT
TCTTGACCCAGACCCTGATTTTGTGGTTCAGTGCTTGGAAAGCTGTTGTAGTGAGGCATGCCCA
CCAAGGTCCTCTTCTTTCTCAATCTTAGCATTAGTCTAGTTCCTTTGGCACTTGCTTCTCATAT
TGTTTGAAATTTAATGCATTTTCAGGTTTCCACCTATAAAAAGTGGCGACTATTTGGAAGAGCG
CTTGAGCTCAATATACAAAAAGGAAAAACTTGCTACATGACACCTAAAGTTTGTGGTTTTAGCC
GCAGGTCACTCAAAGAACGTGTAATTGCTAAAGGACATTGCAAACACATGTTAATTATCTGCTG
GACACCGAACACACTATTTTATTATATCCGATGTAAATGGAGGGAGAAACAGTGATGAAAGTAC
ACATTTACCCTTGTGTTGGTAAGGCGCGTCTAGTTCGAAGCAGCCGATGTAATTCTTAATGCTG
CTGCCCCAGCAGTAGCTTAACTATAATGCAGCTAATTACGTACTTCCTCCGTTCCACAATGTAA
GACTTTCTAGTATTGCCCATATATTCATATAGTGGGCAAACTAGCCTCATGGGTTAAAATCCTA
TCTTCTCAATCTTAGCATTAGTCTAGTTCCTTTGGCACTTGCTTCTCATATTGTTTGAAATTTG
ATGCATTTTCAGGTTCCCACCTATAAAAAGTGGCGACTATTTGGAAGAGCGCTTGAGCTCTACA
TACAAATAATCCTACATTTTTACATGTGTAAAGCTTAAACTTGATAACTGGCTCCCATTAATTG
GCTGCTATAAAGTGCTAAATGACCCTGTTTTTGCAGTTGTTTGAGCTAGCCGTGGAGCTTCCCC
GGACCTCAGCTCCTTTCCTTTGACACTTGGTAGTCTTCATTAAAAAAAAGAAGAATGTGAACTG
GATGTACAGTTCTTTTCCCAAAAACACGCAAGAAAACTGAACATGTTGAAGCAATGGATCTTAG
ACTGTTCTGGGAGCTGCAAGCATCTGGGCTCTGGCCTTTCAACTGAACCAGCTTCATGCAGATC
ATGAACAGTTTGATGACATATCTGAAATTTCTGTCTCAAATTCATCTAGAAAAAAAATGATAAA
ATGATATGCAGCCGATCTATGATAGAGCAGCCGGATTATTTTCAGGTGAATTGCCTGTAGTTTG
TCTTGCATAGTCGGCCTCGTTCAATTCATAATAGGCTTATAATGGGCCTTTCTTTGTACGTGAT
GGGATACTAGGCCATTAGTGGGCCTAAGTTTCTCTCTGCTGGGCTATTCTCTTGTTGTAAATGG
GCCCCAAATCTTTGAGTAATGGGCCGTTCGTGGTCCCGTTTTACCGTAGATGGGCCATGTTTGC
TTCCTCCTCTGTAAACCCAGTTACCGTGGGGACGCGGACGCGGACGGCGGCGGCGGCAGCAGCA
GCAAACCGCCGCTTCGGCAGAAGAGGAATCCGGCGATGGCCGGCGGCGGCGGCGGCGGGAATCG
CCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGA
AAGGTACCCAATCCATTCCGGATTCCATGGCAATTTTCCTGGAAACAATCTGTTCCGTGGGCGC
GGCGGCGGCGGAGAGAGAGAGAACAGGGCGTGATTCGTGTGGGGGTGGTTTGGTTTTGCAGGCG
TGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGGTTGCTGAAGCGGT
TGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATGGCGCTGCGGAGGAA
CAGCAACCACCGGGGATACACCCCACCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAA
GGTCTGCGCCTCCTGTTTTGCTCTGCTCGCCGTGTTAAACTGCTAATTGTTAAACCTAAGCATC
CTCTCCTTTTTTAAGACTGTTGATAAATTTAATCCTGAAGTGTATGGGATAACACTGGCAAGTT
AGTATAATAGTAGCACATGACAGAGCTGGAGTGACCCTTTTGTCGGCAAAAATCAGAAGTTGAC
ATGTTAGTGCCTGATTATGGAATATTCTTTATTAGCAGTATAAGCAAATTAAAAATGTCCCGAT
GTTTGTGAAAGATGCTTTTGAAAACTGAACTAGAAACCATGGTTCTGGTTTGATCTATCTGAAC
ATCTCACAATCTTCAATAAGTACAAGGTGCATGGAGTAATAACTAATAAGTACAAGTGCTCACT
GCCTATACTTTGAACAATCACTAGATTTTGTGGATTTTACCTTCTGGTGTTTGTAGTGATGTAC
TTATTTAAGATCTGTAACTGTGATTTATGATACAGGAGACCTCAAGGAAAGTTTCTATATTGGG
CCCATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGGTACTCCCTTCT
CCTTTTTTATCACTTCTTTCCAAAACATAAATAAATTCTATCTTTGGCTACAGAGCGCTTACCA
AGTTGGAGGGAGACAATTAAGATGTACCATGCAAGTGCACTGTAAGTCCTCGTTTTGCTCATCT
CAGCGAAGAAAATCCATTAATTGTATTACGTGAGCATTGTGTTTGTATAACTTTGGAGTTATTT
GTTTAAATAATTTAAATATTCCCGCTTATTCGCTACCACTACCAGGGCTACTGGCAAAAGGATA
CTCTCTCTAATTGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATCGGTGCCTTCA
TCCGCCCATCAGCATTTCTTCGATTATTGCACTACCCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021