Detail information of BGIOSGA033301_circ_ag.17


General Information
CircRNA Name BGIOSGA033301_circ_ag.17
ID in PlantcircBase osi_circ_008635
Alias Chr10:22134272_22138847(MH63RS2), Chr10:22134272_22138847(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19257260-19261836  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033301_circ_g.1 BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.2 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.11 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.14 BGIOSGA033301_circ_ag.15 BGIOSGA033301_circ_ag.16
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGTAGACGACTCTGATTATGGCAATTATGGTGCATCAGCTCACTCAGATTATGGAATGATA
ACCCTCCTAGCAACAGATGGCACTCCTGGGCTACAGgatatgcaaggagaaggataggcatccc
cagctctgggaagatgttcatcacatcgatgggtaaatagtaaaatactttttggtgatattaa
tgaataac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATGCAAGGAGAAGGATAGGCATCCCCAGCTCTGGGAAGATGTTCATCACATCGATGGGTAA
ATAGTAAAATACTTTTTGGTGATATTAATGAATAACAATTCCAAATATACTGTTGCTTTGCTCT
TAGCTCTCTGGATCACTGTCTTGTGTGCTCCTTAGATAACCAGGTCTTGTGTACAGGGCTCTGA
TTATTAACATTGGCGATTTGCTAGAAAGGTGGACAAACTGTGTTTTCAGGTACCATCCTTTTGT
ACTTCAATTGATCCATTATGTGGTTGTGACGAAGCCTCATGTGCTGTGGTCACTGTTACGAAAG
TTCAAATAAACCAGCTACAGTTGTGAGTAGTTTCACCAAAAACTTTCTGTTTTTTTGCAACTTG
ATATGGTTAAATATGCTTGAAAGCACAATGCTTTCTAAGTTGGTTTAGGCTTGTCAATATCATG
AGCAGGATAGATCATGTCCATGTTGTTTCTGAAATTCTACAGGTCTTTTTGAGTTCTGAAATTT
AAGGAAAAAGCCTTGTGTATGAATTTTAATTATTCTTGCTCTTTTGCTGACTTGTAGGTCTACA
CTGCATCGTGTTGTGGCAGTTGGTAAAGAGCGATACTCTGTGAGTATTACTAACCACTGAAATT
AGAATTTCATTATTGAGGGGTTTCAGCTCATTGAATTATTGTTATTTTTTGTGGAAGTTCCCAT
TGAATTCATGTTCTAGAGCTGGATGAACCCCGCTTTAAGGGAAAACTAATACTGATAATATATA
GCACTTCAGTGACTAAATTGTGTGCTTAACTTCAGGACCTTTCTGGTGGACATTCTTTCTTACG
CAAGTGCTTTTTTTTTTTTTTTTTCAATTTGTCAGGTGGCTTTCTTTCTTGACCCAGACCCTGA
TTTTGTGGTTCAGTGCTTGGAAAGCTGTTGTAGTGAGGCATGCCCACCAAGGTCCTCTTCTTTC
TCAATCTTAGCATTAGTCTAGTTCCTTTGGCACTTGCTTCTCATATTGTTTGAAATTTAATGCA
TTTTCAGGTTTCCACCTATAAAAAGTGGCGACTATTTGGAAGAGCGCTTGAGCTCAATATACAA
AAAGGAAAAACTTGCTACATGACACCTAAAGTTTGTGGTTTTAGCCGCAGGTCACTCAAAGAAC
GTGTAATTGCTAAAGGACATTGCAAACACATGTTAATTATCTGCTGGACACCGAACACACTATT
TTATTATATCCGATGTAAATGGAGGGAGAAACAGTGATGAAAGTACACATTTACCCTTGTGTTG
GTAAGGCGCGTCTAGTTCGAAGCAGCCGATGTAATTCTTAATGCTGCTGCCCCAGCAGTAGCTT
AACTATAATGCAGCTAATTACGTACTTCCTCCGTTCCACAATGTAAGACTTTCTAGTATTGCCC
ATATATTCATATAGTGGGCAAACTAGCCTCATGGGTTAAAATCCTATCTTCTCAATCTTAGCAT
TAGTCTAGTTCCTTTGGCACTTGCTTCTCATATTGTTTGAAATTTGATGCATTTTCAGGTTCCC
ACCTATAAAAAGTGGCGACTATTTGGAAGAGCGCTTGAGCTCTACATACAAATAATCCTACATT
TTTACATGTGTAAAGCTTAAACTTGATAACTGGCTCCCATTAATTGGCTGCTATAAAGTGCTAA
ATGACCCTGTTTTTGCAGTTGTTTGAGCTAGCCGTGGAGCTTCCCCGGACCTCAGCTCCTTTCC
TTTGACACTTGGTAGTCTTCATTAAAAAAAAGAAGAATGTGAACTGGATGTACAGTTCTTTTCC
CAAAAACACGCAAGAAAACTGAACATGTTGAAGCAATGGATCTTAGACTGTTCTGGGAGCTGCA
AGCATCTGGGCTCTGGCCTTTCAACTGAACCAGCTTCATGCAGATCATGAACAGTTTGATGACA
TATCTGAAATTTCTGTCTCAAATTCATCTAGAAAAAAAATGATAAAATGATATGCAGCCGATCT
ATGATAGAGCAGCCGGATTATTTTCAGGTGAATTGCCTGTAGTTTGTCTTGCATAGTCGGCCTC
GTTCAATTCATAATAGGCTTATAATGGGCCTTTCTTTGTACGTGATGGGATACTAGGCCATTAG
TGGGCCTAAGTTTCTCTCTGCTGGGCTATTCTCTTGTTGTAAATGGGCCCCAAATCTTTGAGTA
ATGGGCCGTTCGTGGTCCCGTTTTACCGTAGATGGGCCATGTTTGCTTCCTCCTCTGTAAACCC
AGTTACCGTGGGGACGCGGACGCGGACGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTCGGC
AGAAGAGGAATCCGGCGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGT
GGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGTACCCAATCCATTC
CGGATTCCATGGCAATTTTCCTGGAAACAATCTGTTCCGTGGGCGCGGCGGCGGCGGAGAGAGA
GAGAACAGGGCGTGATTCGTGTGGGGGTGGTTTGGTTTTGCAGGCGTGCGTGGAGTCCGGATTC
TTCTACGTGGTCAACCATGGGGTGGAGGAGGGGTTGCTGAAGCGGTTGTTCGCGGAGAGCTCGA
AGTTCTTCGAGCTGCCGATGGAGGAGAAGATGGCGCTGCGGAGGAACAGCAACCACCGGGGATA
CACCCCACCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGTCTGCGCCTCCTGTTT
TGCTCTGCTCGCCGTGTTAAACTGCTAATTGTTAAACCTAAGCATCCTCTCCTTTTTTAAGACT
GTTGATAAATTTAATCCTGAAGTGTATGGGATAACACTGGCAAGTTAGTATAATAGTAGCACAT
GACAGAGCTGGAGTGACCCTTTTGTCGGCAAAAATCAGAAGTTGACATGTTAGTGCCTGATTAT
GGAATATTCTTTATTAGCAGTATAAGCAAATTAAAAATGTCCCGATGTTTGTGAAAGATGCTTT
TGAAAACTGAACTAGAAACCATGGTTCTGGTTTGATCTATCTGAACATCTCACAATCTTCAATA
AGTACAAGGTGCATGGAGTAATAACTAATAAGTACAAGTGCTCACTGCCTATACTTTGAACAAT
CACTAGATTTTGTGGATTTTACCTTCTGGTGTTTGTAGTGATGTACTTATTTAAGATCTGTAAC
TGTGATTTATGATACAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCCATTGGAGATGAAGGT
TTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGGTACTCCCTTCTCCTTTTTTATCACTTCTT
TCCAAAACATAAATAAATTCTATCTTTGGCTACAGAGCGCTTACCAAGTTGGAGGGAGACAATT
AAGATGTACCATGCAAGTGCACTGTAAGTCCTCGTTTTGCTCATCTCAGCGAAGAAAATCCATT
AATTGTATTACGTGAGCATTGTGTTTGTATAACTTTGGAGTTATTTGTTTAAATAATTTAAATA
TTCCCGCTTATTCGCTACCACTACCAGGGCTACTGGCAAAAGGATACTCTCTCTAATTGCTCTG
AGTTTGAATCTTGACGCTGAATTCTTTGAGAACATCGGTGCCTTCATCCGCCCATCAGCATTTC
TTCGATTATTGCACTACCCAGGTCAACTTATTTCATGCCCCTGTATGTATGTCATATGACATTA
ACCAAAGTAGTATTCTCATGATACGCAGAGAAATGCTAAAAACATGTGTGCTGGTCTTTAGGTT
GCTTCTTGTTGTGTTGGATTGCAGATAATTGCCAATGGTTTCTTTAGCTCTGATTTATTCAACA
AGTTTATTTATTTCAAACATGAATGAGTGCACTATATGTCATTCTAAAGAATGAAGAACTTGAT
ATCATCCTATTATTGTGGTTTTGTTGTGTTGGTGCTCAGAAACATTACAAATCTGTCCATTACA
GTGAATAGGGAAATTGCTACTTTCATGATCTCAATTATAATTTTTTTCTAAACTATAACAATTT
CATTTGTTAGCTAAAACTTGCATAGAAGACTACTTTTCAGTTTGTAAAAATATCTTAACTGTTA
ACTTACAGTAGCAGCTAATGGAGCAGATCTGTGTGATCTCTATTGCTAAAATTTCAAAGGAACT
GTCTTGCTGCTGACCGCTGTTTGCTGGAGCATAATGATAAATATGTTCTTGTAATTTGTAAATC
AATGTTAATCTAAGTTATAAAGATACCTTAGGTTGCTTCATTTTGTTGATTGTTTTGCTTACCT
GTTATTATACTGGAAAGCGGGATGTGAACTGAAAATATCGTGAAGCTTCTTCAAGCTTCTAGGA
ACGTTTGTTTTTTGTGAGCTGACTGTTTTTCTTTTTTACTGTGGAGCTAGTTAAGCGTTGTGTT
TTTCGTCCATACTGTAGTATTTATTGGTTTTATCTAAATAAAAAAGAATTTTAAATGTAGGTGA
AGTAGACGACTCTGATTATGGCAATTATGGTGCATCAGCTCACTCAGATTATGGAATGATAACC
CTCCTAGCAACAGATGGCACTCCTGGGCTACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021