Detail information of BGIOSGA033301_circ_g.1


General Information
CircRNA Name BGIOSGA033301_circ_g.1
ID in PlantcircBase osi_circ_008619
Alias Chr10:22126698_22131501(MH63RS2), Chr10:22629179_22633963(ZS97RS2), Chr10:22126698_22131501(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19249686-19254489  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA033301
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.2 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.11 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.14 BGIOSGA033301_circ_ag.15 BGIOSGA033301_circ_ag.16 BGIOSGA033301_circ_ag.17
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033301-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGCCGGAGATGGTCGCCGCCGCCGGGGATCGCCTGGATCTCCCCGTGGTGGACCTCGCGTCC
TCCGACCTCCGATCCTCCGCCGAATCCATCCGAAAGggcttgcgtggagtacggattcttctac
gtggtcaaccatggagccgagggattggtggagaaggtgttcgcggagagcagcaagtttttcg
agcagccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTTGCGTGGAGTACGGATTCTTCTACGTGGTCAACCATGGAGCCGAGGGATTGGTGGAGAAG
GTGTTCGCGGAGAGCAGCAAGTTTTTCGAGCAGCCGCTGGGGGAGAAGATGGCGCTGCTGAGGA
ACAGAAACTACCTGGGGTACACCCCGCTTGGCGCCGATAAGCTTGACGCCTCGTCCAAATTCAA
AGGTCTGCGCCTTATGTTTCATAGCCAATTCTTCGCTTGAGCTTTGCAGTTTGCACTGCTCTTC
TATAGCCAATTTGAGCCTAAGGTGTGTCTAGCTAGGTAACTGTAATGATGGAAGATGACGAGTT
GTATCGGCAAAAGGCAGAACTTGACAAATTAGTCTGTTAGTGTCTGATGATGGAGTATTATTTA
GGCGTACAAGGCTATACAAGTACAAAAATGTCCCAATGCTTGTGAATGATTCCGTTTAGAAATG
ATTACAAGTCATGGCTCTGGTTTGATCGACCTGAAGATCGCACAATCTTCAATTAGTACAAGGC
GAATATAATTCGAGATGAAGCAGATAACTGGATGAGCGCTGAAGAACCATTTACCATTTAACGT
ATCCTCTCTGCCTCTAGTTTGAACAGCCGATACATCTTGTCGATTTTACCTTCTTGTGTTTGTC
ATAATGCAGTCGAGACTTTTGATTGTGATTTGTGATCCAGGAGACCTCAATGAAAATTTCTGTA
TCGGACCTATCAGAAAAGAAGGTTCTCAGAATGATGCTAACCAATGGCCTTCTGAAGGCAATTC
CCCCACCTCTCTTTTTCGTTGTTTCCGTTTCTTCAAGAAAATAAATAAATTATTTCTTTGGGTA
CAGAGAACTTCCCATGTTGGAAGGAGACAATGAAGCTATACCATGAAACTGCACTGTAAGTTAT
CATTTTGCCCATCTCAGCAAAGGAAATTTAACAGCTGTAATGCAATCTACAACAATCAGTCCCT
CATTGATTCGCTGCATCAGCATTGTGTTTGTGTAATACTTTTATATAACTATTTGTCTCAAATT
TGAATATTCCTATTTATTCGTACCTCTTCCAGGGCTACTGGTAAAAGGATACTCTCTCTAATTG
CTCTGAGTTTGAATCTCGACGCTGAATTCTTTGACTGCCCAGTGGCCTTTCTTCGGTTATTGCA
CTACCCAGGTAACCGTAGTGCAAGTCCCTTTATAATATGAAATTAGCCCAAAGTTGCATTCTAA
TAATATGCAGCAGAGTGCTAAGTTGAGCATTGTCATTATTGGGGAGCCAATTGAGCTTCTTTTC
CTCCTTACACAAATACACAGTACTTATTGGTTTTGTATGAATAAAAAATAATTTTAAATGTAGG
TGAAGCTAACGAGTCCGATGATGGCAATTATGGTGCATCAGCTCACTCAGACTATGGAGTACTA
ACACTTGTAGCAACAGATGGCACTCCTGGGCTGCAGGTACACCATGTTCTCGCAAATTTTGATT
CTCCATCTCAGTTCTGTTCTATTTTGCAGCTAATTGATCATTTAAACAGTATAGGAGTATGCTC
ATAATATTTTATGAGGATGGGATTATTGCCCACCTTTTACCACTTTCAAGCAAAACATTACCTC
TTCCTTAGAAAAGTAGAAATATAATATGCATATTTTTTTGCGCTTATGTTCTGGTTTCTCTCAC
TGTTTTGAGTTTGCAGATATGCAGGGAGAAGGATAAGTGCCCCCAGCTTTGGGAAGACGTTCAT
CACATTGAAGGGTAAATAACAATACTTTTTTATGATATTAATGAATAACAATTTCATATATATC
ATTGCTTTGTCTTTTTTCAGAAAATGGATTAAAATCCGGTCTCTACATCCAAACTGGATGTACA
CAGCCCTACATCATATGAAATTGCTTTACACCATTGCTTTGTTCTTAGCTTTCTGGACCTCAGT
TCTGTGTGCTCCTTAGATAATGTCATGTCTTGTGTTATGTATCTGTAGGGCCCTGATTGTTAAT
ATCGGCGATTTGCTACAAAGGTGGACTAATTGTGTTTTCAGGTACCATATTTTCTTATTTCTAT
CAACCTATTGTGTGGTTGCGAGGAAGCCTCATGTATTGTGCTGGCTGTTTTAAATAAGTTCAAA
CAAACTATTACAGTTGCAAGTAGTTGCCCCAAGAACTTTCTGTTTTCTGCAACTCGATATGGTT
AAATATGTTAGAAGGCACAACGCTTTATCAATGATAAATTGGTTAGGCTTGTCAGTATCACGAA
CAAGTTAGACCATGTTTGTGTGGTTCCTTACAAATTCAGATTTCTGTTTTATGACATTATACAC
TTCTTTTCCTATTTTATATCTATGGAAAAGAACAATTTTGATTGTTCTCGTTCTTTTGCTGACC
TGTAGGTCTACACTGCATCGCGTTGTTGCAGTTGGTAAAGAGCGATACTCTGTGAGTATAACTA
ACAGCTGAAATCAGAAATTCATAACTGAGGAGTTTTAGCTCCTATTGAACTCATGTTGTAAAGT
CGGATGAACTTCTTAGCGGTAAAACCACCATTGATAATATATAGCATTTCTAGTATATAGCATT
TCTCCAACTAAATATTGCATCCTTTTTGGTGCACGTTCTTTCTTACACATGTTTTTCAATTTTT
TAGGTGGCTTTCTTTCTTCACACAAACCCTGATTTAGTGGTTCAATGCTTGGAAAGTTGTTGCA
GTGAGGCATGCCCACCGAGGTCTTCTTCCTCCTCTTAACCTTAGCATTATTGCAGTTCTTTCAT
GCTTGCTTCTCACTGTTAGAAATTGATGCATACTCAGGTTCCCACCTATAAGGAGCGGCGACTA
TTTGGAAGAGCGATTGTGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGG
ATGTAGAGGCCAGGTTTTAATCTATTTTCTGAGAAAACAAATAATCCTATGTTTTTACATGTGT
AGAGCTTAAGGCCCTGTTTCTTTCAGCTTGGGATTATTATAATCCAGATTATTGAAGTAAGTTG
AAAGAAACAGACAACTTATTGAAGTAGTTTATTATAATCTGGAGTCCAGCTTATTATAATCTGA
TAAGCTCATCTAGGTGAGCTTTTTCCAGATTATTGGGTGAAAAATTACCCACCATGCCACCCCA
CCCTCTTTTTAGACTTGCAAACCCAATAATCTAGGCTCTAATAATCTAGGAAAGAAACAACTAA
CCGCTTATTCTACTACAGATCATAACAATCTAGTTTATAGTAATCTGACTCAATAATCTAGATT
ATAATAATCCCAAGCTGAAAGAAACAGGCCTAAGATTAGTATATCTTCACGTCAGTAAACTTCA
GTGAGCAGCTATTCCGTTAGAGATGGACGGAAACATCTTGATCTTATATTCTTATATATGTAGC
CCATCTGCTGTTGCTGATTTCTCTCGTGTGTTAACACTAGCTTTACTTGTGAGCAAACATGTTT
GCTCTCCACTGTATTTTCTGTTGCCAAAACATCGGTACACAGTTGTTTGTAAAGATTCTCATGA
TGCTTTCACGATAAAGGAAGACACAAAGAAAGTAACTTTGCTCTCAGATCAAGAACTGCCCATT
TGCGTTTGATTGGAGCAAGTTGTATGGTTTCACATTCTGTAAGACTGTAACAAGGGACAAGAGC
AAGAAGTACCTGTGTGTTTTTCTATTGTAATTGAAAATTTTGATGGGGGAAGCGCTGATATATA
TACTTCTCAAACACATACTTCCTGTGTGTTCTGAAGCTTGTTTTCTACATGTTGCAGCTCCATT
TTTGCCATAGTTTAGTACTCCCTCCGTCCCAAAATAAATGCAGTTTTAGCACTGTTCATATCTA
ACGTTTGACCGTTCGTCTTATTTGAAAAAAATTATGATTAATATTTTTATTGATATTAGATGAT
AAAACATAAATAGTACTTTATGTGTGACTATTTTTTAAATATTTTTCATAAAATTTTCAAATAA
AACGGATGGTCAAAACACTGAACACGAATATTTATGGCTGCACTTATTTTGAGACGGAGGTAGT
AAGCAGCAGCTATAGGTGGACTATTGAGCAGCTCCTGAAGTGAAATGACTTTTTTTTTTGAGAA
GGGTACAACACAGGACGCACACTAACACACACCACACTCACACCACAACACACGCGTGCACGTC
CCTAACACATGCTAGAAATGAGATTGGAGGCACTAGGCCTCAGCGCACGGGAAACGTACAGTCC
TACTGAACGCGCACGCGTGTGCGTACCCTATTACCTAGACGGGATCAACCGAAGTCAGTCCCAG
GTAAAGAGGGGAAAAAAACCCCCGGACGAGGGATGAGCGTCAAGTCTGGGACTCGAACGCTGGT
CGGCACGGAGCGAGCCACTGGCTCCTGCCACCTGCGCTACGCACGGTCCTCCCTGAAGTGAAAT
GACTGACAACCAGTATCCAGAATTGGGCCTGGTCTGTTCTCTAATTGGCTTTTCATGGGCCTCT
CCTGTACGGCCGTATTTTCTCTCTGCTGGGCTGTAATCTTGTGCGAGATGGGCCATTCCTTTTA
AGAAACGGGCCTTTCGTGGGCCAGGTTTACTGTAGCTGGGCCGTGTGTTGTTTGTCCACTGCTG
GCCCACCTGTCAGTCCAGTCCATGGATACAGACGCCGGAAGTGGATAGCAGCAGAAGCAACAAG
CAGCAAACACTTCCCGGCGGGAGAGGCAGCGGGAAGCCGGAGATGGTCGCCGCCGCCGGGGATC
GCCTGGATCTCCCCGTGGTGGACCTCGCGTCCTCCGACCTCCGATCCTCCGCCGAATCCATCCG
AAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021