Detail information of BGIOSGA033301_circ_g.11


General Information
CircRNA Name BGIOSGA033301_circ_g.11
ID in PlantcircBase osi_circ_008629
Alias Chr10:22631551_22636974(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19252058-19257500  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033301
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033301_circ_g.1 BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.2 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.14 BGIOSGA033301_circ_ag.15 BGIOSGA033301_circ_ag.16 BGIOSGA033301_circ_ag.17
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA033301-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTGTCTTGTGTGCTCCTTAGATAACCAGGTCTTGTGTACAGGGCTCTGATTATTAACATTGG
CGATTTGCTAGAAAGGTGGACAAACTGTGTTTTCAGggtctacactgcatcgcgttgttgcagt
tggtaaagagcgatactctgtgagtataactaacagctgaaatcagaaattcataactgaggag
ttttagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021