Detail information of BGIOSGA033301_circ_ag.15


General Information
CircRNA Name BGIOSGA033301_circ_ag.15
ID in PlantcircBase osi_circ_008633
Alias Chr10:22133109_22137685(MH63RS2), Chr10:22133109_22137685(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19256097-19260674  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033301_circ_g.1 BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.2 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.11 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.14 BGIOSGA033301_circ_ag.16 BGIOSGA033301_circ_ag.17
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTATCACTTCTTTCCAAAACATAAATAAATTCTATCTTTGGCTACAGAGCGCTTACCAAGTTG
GAGGGAGACAATTAAGATGTACCATGCAAGTGCACTgggctactggcaaacggatactctctct
agttgctctgagtttgaatctagacgctgaattctttgactgcccgttggcatttcttcgattg
ttgcacta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCTACTGGCAAACGGATACTCTCTCTAGTTGCTCTGAGTTTGAATCTAGACGCTGAATTCTT
TGACTGCCCGTTGGCATTTCTTCGATTGTTGCACTACCCAGGTTATCTTATTGCATGTCCCTTT
CTCATATGAAGTTAACCAAAGTTGTGGAGTAATGATATGCAGTGGACTGCTATGTACATGCTTG
ATATTGTCCTTATCTCGCTTCTTGCCATGTCAGAATGCAGATTGATGCTTGGATTTGTTCTCTT
GCACTGATTTGTTCAACAAATTTCTTTCTTTGAACAGAATGCTGTATGTCATTCTAAAGGATGA
AGAACATGGTATCCTCCTATTGATGTAGCTTTATTGGGTTGGCCCTTGGGAACATTACAAACAT
GTCAAGTAAATTATAATGAAAAAGTCATAGTGCTACTTGCATGGTCTCAATTGCAATTTTTACT
AAAACTTCGTTTAATATCTCACTTGTTAACTTGCACTAGTAGCTGACAGAGTAGATCTGCGTGA
TAGAAATTGCTAATAGTTCAAACTAATTTATCTTGATGCTGACCTACTGTATACTGGAGCGTAA
TGATAAATATGTTCTTGTAAATCAATGAGCCTAAGTTATGGAGGTTCCTAAGGTAGCTTTGTTT
TCTGCATTGTTTTGCTTGCTACTGCCATACTGGAAAGCAGGATATGAACTGAAAATATCATGAA
ACTTCAACCTGCTTCTAGGAACTTTTGTTTTGGAGGACTGACTTTGTTTCATTGTTATTGTGTT
TTCCTCCTTACATAGTAGTTATTGGTTTTGTCTGAATAGAAAATAATTCTAAATGTAGGTGAAA
TCAACGAGTCCGATGATGGCAACTATGGAGCATCAGCTCACTCAGATTATGGAATACTAACCCT
TCTAGCAACAGATGGCATTCCTGGGCTGCAGGTACACCATGTTCTTCACATATATTAATTCACC
AATTTCAATTCTGTTCTCTTTTCCAGCTAATCAATCATGTAGACAAATACATGCTCAGAAGGTT
TGGTGAGAATGGGGTTATGTGATCACCTTTTACCACTTTCAAGCAAAACAATACTTTCCTGTTT
AGAAAAGCAGAAAAATAATATGTATTCTTTATTTTTGCATTTATATTCTAGTTTTCTCACTGTT
GTGCATTTGCAGATATGCAAGGAGAAGGATAGGCATCCCCAGCTCTGGGAAGATGTTCATCACA
TCGATGGGTAAATAGTAAAATACTTTTTGGTGATATTAATGAATAACAATTCCAAATATACTGT
TGCTTTGCTCTTAGCTCTCTGGATCACTGTCTTGTGTGCTCCTTAGATAACCAGGTCTTGTGTA
CAGGGCTCTGATTATTAACATTGGCGATTTGCTAGAAAGGTGGACAAACTGTGTTTTCAGGTAC
CATCCTTTTGTACTTCAATTGATCCATTATGTGGTTGTGACGAAGCCTCATGTGCTGTGGTCAC
TGTTACGAAAGTTCAAATAAACCAGCTACAGTTGTGAGTAGTTTCACCAAAAACTTTCTGTTTT
TTTGCAACTTGATATGGTTAAATATGCTTGAAAGCACAATGCTTTCTAAGTTGGTTTAGGCTTG
TCAATATCATGAGCAGGATAGATCATGTCCATGTTGTTTCTGAAATTCTACAGGTCTTTTTGAG
TTCTGAAATTTAAGGAAAAAGCCTTGTGTATGAATTTTAATTATTCTTGCTCTTTTGCTGACTT
GTAGGTCTACACTGCATCGTGTTGTGGCAGTTGGTAAAGAGCGATACTCTGTGAGTATTACTAA
CCACTGAAATTAGAATTTCATTATTGAGGGGTTTCAGCTCATTGAATTATTGTTATTTTTTGTG
GAAGTTCCCATTGAATTCATGTTCTAGAGCTGGATGAACCCCGCTTTAAGGGAAAACTAATACT
GATAATATATAGCACTTCAGTGACTAAATTGTGTGCTTAACTTCAGGACCTTTCTGGTGGACAT
TCTTTCTTACGCAAGTGCTTTTTTTTTTTTTTTTTCAATTTGTCAGGTGGCTTTCTTTCTTGAC
CCAGACCCTGATTTTGTGGTTCAGTGCTTGGAAAGCTGTTGTAGTGAGGCATGCCCACCAAGGT
CCTCTTCTTTCTCAATCTTAGCATTAGTCTAGTTCCTTTGGCACTTGCTTCTCATATTGTTTGA
AATTTAATGCATTTTCAGGTTTCCACCTATAAAAAGTGGCGACTATTTGGAAGAGCGCTTGAGC
TCAATATACAAAAAGGAAAAACTTGCTACATGACACCTAAAGTTTGTGGTTTTAGCCGCAGGTC
ACTCAAAGAACGTGTAATTGCTAAAGGACATTGCAAACACATGTTAATTATCTGCTGGACACCG
AACACACTATTTTATTATATCCGATGTAAATGGAGGGAGAAACAGTGATGAAAGTACACATTTA
CCCTTGTGTTGGTAAGGCGCGTCTAGTTCGAAGCAGCCGATGTAATTCTTAATGCTGCTGCCCC
AGCAGTAGCTTAACTATAATGCAGCTAATTACGTACTTCCTCCGTTCCACAATGTAAGACTTTC
TAGTATTGCCCATATATTCATATAGTGGGCAAACTAGCCTCATGGGTTAAAATCCTATCTTCTC
AATCTTAGCATTAGTCTAGTTCCTTTGGCACTTGCTTCTCATATTGTTTGAAATTTGATGCATT
TTCAGGTTCCCACCTATAAAAAGTGGCGACTATTTGGAAGAGCGCTTGAGCTCTACATACAAAT
AATCCTACATTTTTACATGTGTAAAGCTTAAACTTGATAACTGGCTCCCATTAATTGGCTGCTA
TAAAGTGCTAAATGACCCTGTTTTTGCAGTTGTTTGAGCTAGCCGTGGAGCTTCCCCGGACCTC
AGCTCCTTTCCTTTGACACTTGGTAGTCTTCATTAAAAAAAAGAAGAATGTGAACTGGATGTAC
AGTTCTTTTCCCAAAAACACGCAAGAAAACTGAACATGTTGAAGCAATGGATCTTAGACTGTTC
TGGGAGCTGCAAGCATCTGGGCTCTGGCCTTTCAACTGAACCAGCTTCATGCAGATCATGAACA
GTTTGATGACATATCTGAAATTTCTGTCTCAAATTCATCTAGAAAAAAAATGATAAAATGATAT
GCAGCCGATCTATGATAGAGCAGCCGGATTATTTTCAGGTGAATTGCCTGTAGTTTGTCTTGCA
TAGTCGGCCTCGTTCAATTCATAATAGGCTTATAATGGGCCTTTCTTTGTACGTGATGGGATAC
TAGGCCATTAGTGGGCCTAAGTTTCTCTCTGCTGGGCTATTCTCTTGTTGTAAATGGGCCCCAA
ATCTTTGAGTAATGGGCCGTTCGTGGTCCCGTTTTACCGTAGATGGGCCATGTTTGCTTCCTCC
TCTGTAAACCCAGTTACCGTGGGGACGCGGACGCGGACGGCGGCGGCGGCAGCAGCAGCAAACC
GCCGCTTCGGCAGAAGAGGAATCCGGCGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGAC
CTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGTAC
CCAATCCATTCCGGATTCCATGGCAATTTTCCTGGAAACAATCTGTTCCGTGGGCGCGGCGGCG
GCGGAGAGAGAGAGAACAGGGCGTGATTCGTGTGGGGGTGGTTTGGTTTTGCAGGCGTGCGTGG
AGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGGTTGCTGAAGCGGTTGTTCGC
GGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATGGCGCTGCGGAGGAACAGCAAC
CACCGGGGATACACCCCACCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGTCTGC
GCCTCCTGTTTTGCTCTGCTCGCCGTGTTAAACTGCTAATTGTTAAACCTAAGCATCCTCTCCT
TTTTTAAGACTGTTGATAAATTTAATCCTGAAGTGTATGGGATAACACTGGCAAGTTAGTATAA
TAGTAGCACATGACAGAGCTGGAGTGACCCTTTTGTCGGCAAAAATCAGAAGTTGACATGTTAG
TGCCTGATTATGGAATATTCTTTATTAGCAGTATAAGCAAATTAAAAATGTCCCGATGTTTGTG
AAAGATGCTTTTGAAAACTGAACTAGAAACCATGGTTCTGGTTTGATCTATCTGAACATCTCAC
AATCTTCAATAAGTACAAGGTGCATGGAGTAATAACTAATAAGTACAAGTGCTCACTGCCTATA
CTTTGAACAATCACTAGATTTTGTGGATTTTACCTTCTGGTGTTTGTAGTGATGTACTTATTTA
AGATCTGTAACTGTGATTTATGATACAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCCATTG
GAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGGTACTCCCTTCTCCTTTTT
TATCACTTCTTTCCAAAACATAAATAAATTCTATCTTTGGCTACAGAGCGCTTACCAAGTTGGA
GGGAGACAATTAAGATGTACCATGCAAGTGCACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021