Detail information of BGIOSGA016994_circ_g.2


General Information
CircRNA Name BGIOSGA016994_circ_g.2
ID in PlantcircBase osi_circ_005688
Alias 4:28344529|28345817
Organism Oryza sativa ssp. indica
Position chr4: 28344529-28345817  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016994
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA014482_circ_igg.1 BGIOSGA016994_circ_g.1 BGIOSGA016994_circ_g.3 BGIOSGA016994_circ_g.4 BGIOSGA014479_circ_g.1 BGIOSGA016995_circ_g.1 BGIOSGA014476_circ_g.1 BGIOSGA014475_circ_igg.1 BGIOSGA014475_circ_g.1 BGIOSGA014475_circ_g.2 BGIOSGA014474_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016994-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATAACAGTGGTGCGATCACATATGATGAGCTTAAAGAAGGCTTGAGAAAATATGGCTCAACA
CTTAAGGACACCGAGATTCGTGATCTTATGGATGCAgtcaaacttttaccgatgttgtcggaag
cccatattacgtagctccagaagtgttgttgaaacactatggaccagaagctgatgtatggact
gcaggtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAAACTTTTACCGATGTTGTCGGAAGCCCATATTACGTAGCTCCAGAAGTGTTGTTGAAACA
CTATGGACCAGAAGCTGATGTATGGACTGCAGGTGTCATTCTCTACATTTTACTAAGTGGTGTA
CCCCCATTCTGGGCAGGTAAATTTTGATTTCCCCCTTCAATTAACCTGGGAAGCTTGTTTTCTG
ATGATTGTAGCTTGACATTTTTCGTATGTATACAATGCAGAGACACAACAAGGAATATTTGATG
CTGTACTAAAAGGTTTCATTGATTTTGATTCTGATCCTTGGCCTGTGATCTCTGAGAGCGCAAA
GGATCTTATAACAAAAATGCTCAATCCTCGTCCAAAGGAACGCTTAACAGCACATGAAGTTCTA
TGTATGTTTCTTTTACTATATTTTTTTTGACAAAATTCTTTTACTATGTTGTACTCGTGGTCTT
ATTTTTCTCTCTAATGCCTATCCAATCACTTGACACATTTGCAACTGCCGGGAGAAAATGTAAC
ACTTCAACTCTTGCTCAGGCCATCCATGGATTCGTGATCACGGAGTTGCTCCAGATCGGCCTCT
TGATCCAGCTGTCCTATCTCGCATCAAGCAGTTCTCTGCAATGAATAAGTTGAAGAAGATGGCT
TTGCGGGTATGCATGATAACTTTAAGCTTAAGTTTTAAATTACCAGCTTTGTGATACATTGGCT
TTTTTTTTTCTCTACAATAGACTGTTTATTTTGCTCTATGATAAGCTTTTCGCCTAATCTTTCA
ACTTGAACTGAATGCATAGAAGGTGACCTTTTCACTGCCAGCTGTTGACAAGTTTTTGTAGTGA
CTTTTATTCACTAAAAAATAGTACTATACTCAAAGTGGTTTCTTTTGGGGGCAATACTATGTCT
TTTTGTTGTTTCTGTTGAACGGTCACCCACCCACCATATTTATTAAATGTGACCGGATTTGTTA
TAACACTAGGGAGGTATGATGGTTTGATCATTTCTTTTCAGTCTCCCCTTAATACTAGGGAGTT
ATTGAAGCAAACCATGTTGAATTTTGGAACCTGTACTGTTGGTGAAGCATAATTAGTGGGTTTT
GCATTTATGAACAATTTGTGTTTATCCTACCAGGTAATAGCTGAGAGTCTCTCAGAGGAGGAAA
TCGCTGGGTTGAAGGAAATGTTTCAGACTATGGATGCTGATAACAGTGGTGCGATCACATATGA
TGAGCTTAAAGAAGGCTTGAGAAAATATGGCTCAACACTTAAGGACACCGAGATTCGTGATCTT
ATGGATGCA
Conservation Information
Conserved circRNAs osa_circ_025000*
PMCS
Functional Information
Coding potential Y
Potential coding position 28345772-28344607(+)
28344866-28344567(+)
Potential amino acid sequence MAQHLRTPRFVILWMQSNFYRCCRKPILRSSRSVVETLWTRS*(+)
MLNPRPKERLTAHEVLCHPWIRDHGVAPDRPLDPAVLSRIKQFSAMNKLKKMALRVIAESLSEE
EIAGLKEMFQTMDADNSGAITYDELKEGLRKYGSTLKDTEIRDLMDAVKLLPMLSEAHIT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021