Detail information of Os04g0584600_circ_g.4


General Information
CircRNA Name Os04g0584600_circ_g.4
ID in PlantcircBase osa_circ_025000
Alias NA
Organism Oryza sativa
Position chr4: 29532865-29534153  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0584600
Parent gene annotation Similar to Calcium dependent protein kinase. (Os04t0584600-01);S
imilar to Calcium-dependent protein kinase. (Os04t0584600-02);Si
milar to cDNA clone:001-041-E12, full insert sequence. (Os04t058
4600-03)
Parent gene strand +
Alternative splicing Os04g0584600_circ_g.3 Os04g0584600_circ_g.5 Os04g0584600_circ_g.6 Os04g0584600_circ_g.7 Os04g0584600_circ_g.8 Os04g0584600_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0584600-02:4
Os04t0584600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATAACAGTGGTGCGATCACATATGATGAGCTTAAAGAAGGCTTGAGAAAATATGGCTCAACA
CTTAAGGACACCGAGATTCGTGATCTTATGGATGCAgtcaaacttttaccgatgttgtcggaag
cccatattacgtagctccagaagtgttgttgaaacactatggaccagaagctgatgtatggact
gcaggtgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 581
Transcript exons: 29532865-29533008,29533097-29533249,29533395-29533510,29
533986-29534153
GTCAAACTTTTACCGATGTTGTCGGAAGCCCATATTACGTAGCTCCAGAAGTGTTGTTGAAACA
CTATGGACCAGAAGCTGATGTATGGACTGCAGGTGTCATTCTCTACATTTTACTAAGTGGTGTA
CCCCCATTCTGGGCAGAGACACAACAAGGAATATTTGATGCTGTACTAAAAGGTTTCATTGATT
TTGATTCTGATCCTTGGCCTGTGATCTCTGAGAGCGCAAAGGATCTTATAACAAAAATGCTCAA
TCCTCGCCCAAAGGAACGCTTAACAGCACATGAAGTTCTATGCCATCCATGGATTCGTGATCAC
GGAGTTGCTCCAGATCGGCCTCTTGATCCAGCTGTCCTATCTCGCATCAAGCAGTTCTCTGCAA
TGAATAAGTTGAAGAAGATGGCTTTGCGGGTAATAGCTGAGAGTCTCTCAGAGGAGGAAATCGC
TGGGTTGAAGGAAATGTTTCAGACTATGGATGCTGATAACAGTGGTGCGATCACATATGATGAG
CTTAAAGAAGGCTTGAGAAAATATGGCTCAACACTTAAGGACACCGAGATTCGTGATCTTATGG
ATGCA

Genomic sequence GTCAAACTTTTACCGATGTTGTCGGAAGCCCATATTACGTAGCTCCAGAAGTGTTGTTGAAACA
CTATGGACCAGAAGCTGATGTATGGACTGCAGGTGTCATTCTCTACATTTTACTAAGTGGTGTA
CCCCCATTCTGGGCAGGTAAATTTTGATTTCCCCCTTCAATTAACCTGGGAAGCTTGTTTTCTG
ATGATTGTAGCTTGACATTTTTCGTATGTATACAATGCAGAGACACAACAAGGAATATTTGATG
CTGTACTAAAAGGTTTCATTGATTTTGATTCTGATCCTTGGCCTGTGATCTCTGAGAGCGCAAA
GGATCTTATAACAAAAATGCTCAATCCTCGCCCAAAGGAACGCTTAACAGCACATGAAGTTCTA
TGTATGTTTCTTTTACTATATTTTTTTTGACAAAATTCTTTTACTATGTTGTACTCGTGGTCTT
ATTTTTCTCTCTAATGCCTATCCAATCACTTGACACATTTGCAACTGCCGGGAGAAAATGTAAC
ACTTCAACTCTTGCTCAGGCCATCCATGGATTCGTGATCACGGAGTTGCTCCAGATCGGCCTCT
TGATCCAGCTGTCCTATCTCGCATCAAGCAGTTCTCTGCAATGAATAAGTTGAAGAAGATGGCT
TTGCGGGTACGCATGATAACTTTAAGCTTAAGTTTTAAATTACCAGCTTTGTGATACATTGGCT
TTTTTTTTTCTCTACAATAGACTGTTTATTTTGCTCTATGATAAGCTTTTCGCCTAATCTTTCA
ACTTGAACTGAATGCATAGAAGGTGACCTTTTCACTGCCAGCTGTTGACAAGTTTTTGTAGTGA
CTTTTATTCACTAAAAAATAGTACTATACTCAAAGTGGTTTCTTTTGGGGGCAATACTATGTCT
TTTTGTTGTTTCTGTTGAACGGTCACCCACCCACCATATTTATTAAATGTGACCGGATTTGTTA
TAACACTAGGGAGGTATGATGGTTTGATCATTTCTTTTCAGTCTCCCCTTAATACTAGGGAGCT
ATTGAAGCAAACCATGTTGAATTTTGGAACCTGTACTGTTGGTGAAGCATAATTAGTGGGTTTT
GCATTTATGAACAATTTGTGTTTATCCTACCAGGTAATAGCTGAGAGTCTCTCAGAGGAGGAAA
TCGCTGGGTTGAAGGAAATGTTTCAGACTATGGATGCTGATAACAGTGGTGCGATCACATATGA
TGAGCTTAAAGAAGGCTTGAGAAAATATGGCTCAACACTTAAGGACACCGAGATTCGTGATCTT
ATGGATGCA
Conservation Information
Conserved circRNAs osi_circ_005688*
PMCS 0.315053957
Functional Information
Coding potential Y
Potential coding position 29534108-29532943(+)
29533202-29532903(+)
Potential amino acid sequence MAQHLRTPRFVILWMQSNFYRCCRKPILRSSRSVVETLWTRS*(+)
MLNPRPKERLTAHEVLCHPWIRDHGVAPDRPLDPAVLSRIKQFSAMNKLKKMALRVIAESLSEE
EIAGLKEMFQTMDADNSGAITYDELKEGLRKYGSTLKDTEIRDLMDAVKLLPMLSEAHIT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017