Detail information of BGIOSGA015180_circ_igg.2


General Information
CircRNA Name BGIOSGA015180_circ_igg.2
ID in PlantcircBase osi_circ_005424
Alias 4:17336137|17338534
Organism Oryza sativa ssp. indica
Position chr4: 17336137-17338534  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015180_circ_g.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.1 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.4 BGIOSGA015180_circ_igg.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTATATGGTCGGAGCAATCGCGGACTGGACTAGCGACCCCTCCATACCGACCTACCCCAAAA
GGAAAACCCCGAGCCACCTGCCCACCAATCCAATCCctgcagttcacctctagcaagagctggt
ttcaagatgttggcagcatcaattgcaccttcagcagcacctgctccaattagcgtgtgcactt
catcaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGTTCACCTCTAGCAAGAGCTGGTTTCAAGATGTTGGCAGCATCAATTGCACCTTCAGCA
GCACCTGCTCCAATTAGCGTGTGCACTTCATCAATAAAGAGAATAATGTCATCATTTTGTTTGA
TTTCCTCCATAAGTTTCTTCAGTCTTTCTTCGAACTCTCCACGGTACTTGGTACCAGCAACAAG
GAGCCCCATGTCAAGAGTAATAACCTAACCGAGTAAAATACCAATCAGTATTCTGAAACAATAC
TATGATAATTAGAAAGAGAAGCTTCACACCACTCAAAATCTTATAAATTGTGCAAGTCTCATTC
AAATCAGACGATAGCCTTGAGTCCTCACTGGTCAGGACACAATACCAATGCAACAACATTAGTT
GCATCAGTACACGATATCGAGCGAAAAGTTGAATTCACAATTACATCTGGACAATGTACTAGAG
AAAGCTATCCAGAAAGCTAGTATTATTCGTAAATGCAAACTTATACTATAATTACTTGTCTAGT
TAATGAAATTAGCGAGTTTACCCAAAAGGGTGATAAACCCTGGAAAAAGTGTCAGCATGATGGT
ACTCATTTGCATGCATATATGCAAAACAATGGTGATGCACAGGTGACAGGATGGTCTAAGCTAA
CCTTCTTTCCTTCAATTGTTTCTGGAACGTCACCATTGGAAATACGTTGTGCAAGCCCCTCAGC
AATAGCAGTCTTTCCAACACCAGGTTCTCCAATTAGGCAAGGGTTGTTCTTTGTCCGCCTTCCC
AAAATTTGAGTTACACGCTCAATTTGATCCTGCCTGCCAACAACTGGGTCTAGTTTACCCTGCA
GATGAAAATGATTAGTTTCTTGTCTTTGCTTATTTATCTACGCAATAGAGAATGCACAAACAAG
TCTGATAAAATACCTCTTCTGCCAGCTTAGTCAAATTAGTGCCATACTCTTCGAGTGTAGGCAT
CTTCTGGCCACTGCTTCCGCCACCAACTCCAGCACCAACAGCTTCTGTGCTTTCACCAACCATT
CTTATGACCTGAACATCATATCAAATGTCATTCCCTGCATAATTTTAACTGAAAGTAGATTGGC
TAAGATTTAAGGAACATAATAGTAAAGCTATTTACCTGGGTACGAATGTTGTTTGGATCAGCAC
CAAGACTTTCCAGTACCCGTGCTGCTACACCTTCACCCTCACGAAGTAGCCCCAGAAGTAAGTG
CTCAGATCCTATATAGTTATGCCCTGAACAATAAAAAATGATGAATATTAGACAAAAGACCATG
CATATTTTTCTAAATAACTAGTCTCACAAGGCATAGATTCAAAACTCAAATGTGAATACTTTCT
TGACCTTAGCATCAAGTCAACAACAATGCCATTGTTACCTTTTCACTTTTTTTGGCATACTTGT
TGTACAGTATAAGTGTAATAATATGCATATTAATAATTTAGTAAACAGTGCCAGATCTGATGCA
TATTAATAAGACCTCTAGCATCATTCTTAAGCCGTAATTATTCATAGGAGAAAGAAAGCATATT
GTACATGATTAGCGATTAACCCACCACATGCAGATTCTCAACCAATTTAGCACTATTATTTTGC
ATACTTAATGTGAAGTACGAAAATTGAGAGCAGGATAATAGCAATATGAAACCAAAGCACATGC
TGGTTTGATTGGAAACTAGAGGTATATAAGCAATAGTTCAGGACAAAAAATGCTATAAGGAAAG
AATTAAAGTGTCCAATTATAACCAAATGAAACTAGCTGAATCTTTGAACAAAGAGAGGTTATAC
CTAGCTGGCGAGCTTCTTCAAGTGACAGTTCCAAGACACGCTTTGCACGAGGCGTGAATGGGAT
CTCAACAGCCACAAACCCGCTACCACGTCCAATGATCTTCTCAACTTCCACACGGGCATCCTTA
AGGTTGATACCCATAGACTTGAGAACCTTTGCCGCGATTCCTGTGCCCTCACCGATAAGGCCCA
GTAGAATTTGCTCCGTCCCAACAAAGTTGTGGCCCAGGCGCCTCGCTTCTTCCTGTGCAAGCAT
GATCACCTTGATTGCCTTCTCCGTGAAGCGCTCAAACATGGCGCGGACCACCCCTCTTGACCCC
AACCCTCGGGGGCGTGAAATCTGGCTCGCGACAATAGAGCCGAAGTCACGCTTAATCACCGACC
TCGAGTCCAGGAAATTCGTCTGCCGCAGGCCCTGGAAACCCCCCAGGGTGAGGGTCCGTGTTGG
CATGGTACGCATCATCGTGGCCCTCGCGCGCACGCGGAACCGCGCGGTGCCGCTCCTCCTGTAT
ATGGTCGGAGCAATCGCGGACTGGACTAGCGACCCCTCCATACCGACCTACCCCAAAAGGAAAA
CCCCGAGCCACCTGCCCACCAATCCAATCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021