Detail information of BGIOSGA015180_circ_igg.4


General Information
CircRNA Name BGIOSGA015180_circ_igg.4
ID in PlantcircBase osi_circ_014313
Alias Chr04:20096649_20097056(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17338108-17338515  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015180_circ_g.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.1 BGIOSGA015180_circ_igg.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGCGCGGTGCCGCTCCTCCTGTATATGGTCGGAGCAATCGCGGACTGGACTAGCGACCCCTCC
ATACCGACCTACCCCAAAAGGAAAACCCCGAGCCACccgataaggcccagtagaatttgctccg
tcccaacaaagttgtggcccaggcgcctcgcttcttcctgtgcaagcatgatcaccttgattgc
cttctccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGATAAGGCCCAGTAGAATTTGCTCCGTCCCAACAAAGTTGTGGCCCAGGCGCCTCGCTTCTT
CCTGTGCAAGCATGATCACCTTGATTGCCTTCTCCGTGAAGCGCTCAAACATGGCGCGGACCAC
CCCTCTTGACCCCAACCCTCGGGGGCGTGAAATCTGGCTCGCGACAATAGAGCCGAAGTCACGC
TTAATCACCGACCTCGAGTCCAGGAAATTCGTCTGCCGCAGGCCCTGGAAACCCCCCAGGGTGA
GGGTCCGTGTTGGCATGGTACGCATCATCGTGGCCCTCGCGCGCACGCGGAACCGCGCGGTGCC
GCTCCTCCTGTATATGGTCGGAGCAATCGCGGACTGGACTAGCGACCCCTCCATACCGACCTAC
CCCAAAAGGAAAACCCCGAGCCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021