Detail information of BGIOSGA015180_circ_g.3


General Information
CircRNA Name BGIOSGA015180_circ_g.3
ID in PlantcircBase osi_circ_005422
Alias 4:17334635|17335938
Organism Oryza sativa ssp. indica
Position chr4: 17334635-17335938  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015180
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015180_circ_g.2 BGIOSGA015180_circ_igg.1 BGIOSGA015180_circ_igg.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.4 BGIOSGA015180_circ_igg.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015180-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTTGGCTCTGGAACCTTAACTGGTTGAAACCGTCGCTCTAAAGCTGGATCTTTCTCAATATG
TTTCCTGTACTCATCAAGTGTTGTGGCACCAATGCActtttcaaaatcttggccacgtacagcc
tcgttcttgtctttggttacctgtcgaagctctttgtccagctccttggcttcatcagggagct
gcaacata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTCAAAATCTTGGCCACGTACAGCCTCGTTCTTGTCTTTGGTTACCTGTCGAAGCTCTTTG
TCCAGCTCCTTGGCTTCATCAGGGAGCTGCAACATAAAGGAATCATGTCTTTAGACAGAAATAA
TACAGTGAACGAGACTGCAACATAGAATAATACAATGTAGTACCTGTGCATGCCTGAGCCTAAC
ACGAGATCCTGCTTCATCAATCAAGTCAATAGCCTTATCAGGCAGGAAGCGATCACTGAAGAAA
GAAAGTAAAATAAGTTTATTAGATTGAAAATCAAATGATTATATGTCAACTGCTGAGAATTTAA
ATCCCATCCAAATGTTCTGCAAAATTAGGGGCATGTTTGGTGCACACCCTAACATTGCCACACA
TGCGTGCCAAAGGTGTGGCTAACAAATCAATGGCAACAATTAGGCAAGGTTTTGCAAAAAAAGA
GAAAAAAAAGGAGTGCATGATATTTGGATCCTAGGGTTAAAAAATTGTGGCATAGCGCAAATGT
GGCAATGAAACAAACAATAGCCTCATGATAGTTTGGCAAAGTGTGGTAGTGAACCAAACACCCA
CTAGATATTTTTATTTGCAAACTTATAACCATATATCCTTTCTAGTCCAGAAATCTGAAATGGA
TCCAAGTCAATCTTTATGTTGTTCAGCTTCAAATAGATCACTGATATTTAATTTGCTTCCAGGA
AGGGATCCTAAACAGCATCATGCACAGAATATAAAATATATTTTATCTTCCAAGGCATTTTGAC
GGTCTAACAGATAAAGGGTGAAACTCAGTAAGTACTATCGTAGTACTCAGAGTTCACAGGACAC
TACTCCTGGACCATTAAACAATGCGCTTACCTGTGCAAGCACCTAGTTACCATTTCAGAAATAA
GTATATGCTTCTCTTCAGAAAAAAAAAACAGATATGTAAAAGACTAAACATCCCTATGCACAAG
AGAAATATAGTACGGTTAAAAATGATGCCAATTAACAAGAATAGGTATGAATTGATATAGCCAC
AGTAAAGGCCAAAAATTAATAAAGATGAAACATATTAGCTAAGAATGTGCTGCATAGCAAACCT
GATATACTGGTATGACAATTGTGCTGCAGCAATTAAAGAATCATCTGTGTATCGCAGCTTATGA
TGCAGTTCATATCGCTCACGAAGTCCTCTTAAGATTTGTATTGTTTCATCAACAGTTGGCTCTG
GAACCTTAACTGGTTGAAACCGTCGCTCTAAAGCTGGATCTTTCTCAATATGTTTCCTGTACTC
ATCAAGTGTTGTGGCACCAATGCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17335901-17335734(+)
17335935-17335783(+)
Potential amino acid sequence MFPVLIKCCGTNALFKILATYSLVLVFGYLSKLFVQLLGFIRELCMPEPNTRSCFINQVNSLIR
QEAITDILV*(+)
MHFSKSWPRTASFLSLVTCRSSLSSSLASSGSCACLSLTRDPASSIKSIALSGRKRSLIYWYDN
CAAAIKESSVYRSL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021