Detail information of BGIOSGA015180_circ_g.2


General Information
CircRNA Name BGIOSGA015180_circ_g.2
ID in PlantcircBase osi_circ_014312
Alias Chr04:20093174_20094892(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17334634-17336352  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015180
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.1 BGIOSGA015180_circ_igg.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.4 BGIOSGA015180_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015180-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTTGTTTGATTTCCTCCATAAGTTTCTTCAGTCTTTCTTCGAACTCTCCACGGTACTTGGT
ACCAGCAACAAGGAGCCCCATGTCAAGAGTAATAACccttttcaaaatcttggccacgtacagc
ctcgttcttgtctttggttacctgtcgaagctctttgtccagctccttggcttcatcagggagc
tgcaacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTCAAAATCTTGGCCACGTACAGCCTCGTTCTTGTCTTTGGTTACCTGTCGAAGCTCTTT
GTCCAGCTCCTTGGCTTCATCAGGGAGCTGCAACATAAAGGAATCATGTCTTTAGACAGAAATA
ATACAGTGAACGAGACTGCAACATAGAATAATACAATGTAGTACCTGTGCATGCCTGAGCCTAA
CACGAGATCCTGCTTCATCAATCAAGTCAATAGCCTTATCAGGCAGGAAGCGATCACTGAAGAA
AGAAAGTAAAATAAGTTTATTAGATTGAAAATCAAATGATTATATGTCAACTGCTGAGAATTTA
AATCCCATCCAAATGTTCTGCAAAATTAGGGGCATGTTTGGTGCACACCCTAACATTGCCACAC
ATGCGTGCCAAAGGTGTGGCTAACAAATCAATGGCAACAATTAGGCAAGGTTTTGCAAAAAAAG
AGAAAAAAAAGGAGTGCATGATATTTGGATCCTAGGGTTAAAAAATTGTGGCATAGCGCAAATG
TGGCAATGAAACAAACAATAGCCTCATGATAGTTTGGCAAAGTGTGGTAGTGAACCAAACACCC
ACTAGATATTTTTATTTGCAAACTTATAACCATATATCCTTTCTAGTCCAGAAATCTGAAATGG
ATCCAAGTCAATCTTTATGTTGTTCAGCTTCAAATAGATCACTGATATTTAATTTGCTTCCAGG
AAGGGATCCTAAACAGCATCATGCACAGAATATAAAATATATTTTATCTTCCAAGGCATTTTGA
CGGTCTAACAGATAAAGGGTGAAACTCAGTAAGTACTATCGTAGTACTCAGAGTTCACAGGACA
CTACTCCTGGACCATTAAACAATGCGCTTACCTGTGCAAGCACCTAGTTACCATTTCAGAAATA
AGTATATGCTTCTCTTCAGAAAAAAAAAACAGATATGTAAAAGACTAAACATCCCTATGCACAA
GAGAAATATAGTACGGTTAAAAATGATGCCAATTAACAAGAATAGGTATGAATTGATATAGCCA
CAGTAAAGGCCAAAAATTAATAAAGATGAAACATATTAGCTAAGAATGTGCTGCATAGCAAACC
TGATATACTGGTATGACAATTGTGCTGCAGCAATTAAAGAATCATCTGTGTATCGCAGCTTATG
ATGCAGTTCATATCGCTCACGAAGTCCTCTTAAGATTTGTATTGTTTCATCAACAGTTGGCTCT
GGAACCTTAACTGGTTGAAACCGTCGCTCTAAAGCTGGATCTTTCTCAATATGTTTCCTGTACT
CATCAAGTGTTGTGGCACCAATGCACTGAAGACAGAAGCATAAGAAATGTGGTGAATTAGGGGC
AAAAACAGGTAACAATCATATATTGTTCATGGATAACATGCAAAGTGGACAAATTAGTCTCTGG
AGTCAAGAGGCTTTGAGGCATTCTCCAGATTAAAACTATAAATATGATAAAAACATAATCATGG
AAGCAACAGATTCAAAATTAGGCACATATACCTGCAGTTCACCTCTAGCAAGAGCTGGTTTCAA
GATGTTGGCAGCATCAATTGCACCTTCAGCAGCACCTGCTCCAATTAGCGTGTGCACTTCATCA
ATAAAGAGAATAATGTCATCATTTTGTTTGATTTCCTCCATAAGTTTCTTCAGTCTTTCTTCGA
ACTCTCCACGGTACTTGGTACCAGCAACAAGGAGCCCCATGTCAAGAGTAATAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021