Detail information of BGIOSGA015180_circ_g.3


General Information
CircRNA Name BGIOSGA015180_circ_g.3
ID in PlantcircBase osi_circ_005425
Alias 4:17336278|17336956
Organism Oryza sativa ssp. indica
Position chr4: 17336278-17336956  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015180
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015180_circ_g.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.1 BGIOSGA015180_circ_igg.2 BGIOSGA015180_circ_igg.4 BGIOSGA015180_circ_igg.5
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA015180-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACCAGGTTCTCCAATTAGGCAAGGGTTGTTCTTTGTCCGCCTTCCCAAAATTTGAGTTACAC
GCTCAATTTGATCCTGCCTGCCAACAACTGGGTCTAtttcttcagtctttcttcgaactctcca
cggtacttggtaccagcaacaaggagccccatgtcaagagtaataacctaaccgagtaaaatac
caatcagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTCTTCAGTCTTTCTTCGAACTCTCCACGGTACTTGGTACCAGCAACAAGGAGCCCCATGTCA
AGAGTAATAACCTAACCGAGTAAAATACCAATCAGTATTCTGAAACAATACTATGATAATTAGA
AAGAGAAGCTTCACACCACTCAAAATCTTATAAATTGTGCAAGTCTCATTCAAATCAGACGATA
GCCTTGAGTCCTCACTGGTCAGGACACAATACCAATGCAACAACATTAGTTGCATCAGTACACG
ATATCGAGCGAAAAGTTGAATTCACAATTACATCTGGACAATGTACTAGAGAAAGCTATCCAGA
AAGCTAGTATTATTCGTAAATGCAAACTTATACTATAATTACTTGTCTAGTTAATGAAATTAGC
GAGTTTACCCAAAAGGGTGATAAACCCTGGAAAAAGTGTCAGCATGATGGTACTCATTTGCATG
CATATATGCAAAACAATGGTGATGCACAGGTGACAGGATGGTCTAAGCTAACCTTCTTTCCTTC
AATTGTTTCTGGAACGTCACCATTGGAAATACGTTGTGCAAGCCCCTCAGCAATAGCAGTCTTT
CCAACACCAGGTTCTCCAATTAGGCAAGGGTTGTTCTTTGTCCGCCTTCCCAAAATTTGAGTTA
CACGCTCAATTTGATCCTGCCTGCCAACAACTGGGTCTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021