Detail information of BGIOSGA015180_circ_igg.1


General Information
CircRNA Name BGIOSGA015180_circ_igg.1
ID in PlantcircBase osi_circ_005423
Alias 4:17335721|17338534
Organism Oryza sativa ssp. indica
Position chr4: 17335721-17338534  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015180_circ_g.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.2 BGIOSGA015180_circ_g.3 BGIOSGA015180_circ_igg.4 BGIOSGA015180_circ_igg.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTATATGGTCGGAGCAATCGCGGACTGGACTAGCGACCCCTCCATACCGACCTACCCCAAAA
GGAAAACCCCGAGCCACCTGCCCACCAATCCAATCCctgatatactggtatgacaattgtgctg
cagcaattaaagaatcatctgtgtatcgcagcttatgatgcagttcatatcgctcacgaagtcc
tcttaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATATACTGGTATGACAATTGTGCTGCAGCAATTAAAGAATCATCTGTGTATCGCAGCTTAT
GATGCAGTTCATATCGCTCACGAAGTCCTCTTAAGATTTGTATTGTTTCATCAACAGTTGGCTC
TGGAACCTTAACTGGTTGAAACCGTCGCTCTAAAGCTGGATCTTTCTCAATATGTTTCCTGTAC
TCATCAAGTGTTGTGGCACCAATGCACTGAAGACAGAAGCATAAGAAATGTGGTGAATTAGGGG
CAAAAACAGGTAACAATCATATATTGTTCATGGATAACATGCAAAGTGGACAAATTAGTCTCTG
GAGTCAAGAGGCTTTGAGGCATTCTCCAGATTAAAACTATAAATATGATAAAAACATAATCATG
GAAGCAACAGATTCAAAATTAGGCACATATACCTGCAGTTCACCTCTAGCAAGAGCTGGTTTCA
AGATGTTGGCAGCATCAATTGCACCTTCAGCAGCACCTGCTCCAATTAGCGTGTGCACTTCATC
AATAAAGAGAATAATGTCATCATTTTGTTTGATTTCCTCCATAAGTTTCTTCAGTCTTTCTTCG
AACTCTCCACGGTACTTGGTACCAGCAACAAGGAGCCCCATGTCAAGAGTAATAACCTAACCGA
GTAAAATACCAATCAGTATTCTGAAACAATACTATGATAATTAGAAAGAGAAGCTTCACACCAC
TCAAAATCTTATAAATTGTGCAAGTCTCATTCAAATCAGACGATAGCCTTGAGTCCTCACTGGT
CAGGACACAATACCAATGCAACAACATTAGTTGCATCAGTACACGATATCGAGCGAAAAGTTGA
ATTCACAATTACATCTGGACAATGTACTAGAGAAAGCTATCCAGAAAGCTAGTATTATTCGTAA
ATGCAAACTTATACTATAATTACTTGTCTAGTTAATGAAATTAGCGAGTTTACCCAAAAGGGTG
ATAAACCCTGGAAAAAGTGTCAGCATGATGGTACTCATTTGCATGCATATATGCAAAACAATGG
TGATGCACAGGTGACAGGATGGTCTAAGCTAACCTTCTTTCCTTCAATTGTTTCTGGAACGTCA
CCATTGGAAATACGTTGTGCAAGCCCCTCAGCAATAGCAGTCTTTCCAACACCAGGTTCTCCAA
TTAGGCAAGGGTTGTTCTTTGTCCGCCTTCCCAAAATTTGAGTTACACGCTCAATTTGATCCTG
CCTGCCAACAACTGGGTCTAGTTTACCCTGCAGATGAAAATGATTAGTTTCTTGTCTTTGCTTA
TTTATCTACGCAATAGAGAATGCACAAACAAGTCTGATAAAATACCTCTTCTGCCAGCTTAGTC
AAATTAGTGCCATACTCTTCGAGTGTAGGCATCTTCTGGCCACTGCTTCCGCCACCAACTCCAG
CACCAACAGCTTCTGTGCTTTCACCAACCATTCTTATGACCTGAACATCATATCAAATGTCATT
CCCTGCATAATTTTAACTGAAAGTAGATTGGCTAAGATTTAAGGAACATAATAGTAAAGCTATT
TACCTGGGTACGAATGTTGTTTGGATCAGCACCAAGACTTTCCAGTACCCGTGCTGCTACACCT
TCACCCTCACGAAGTAGCCCCAGAAGTAAGTGCTCAGATCCTATATAGTTATGCCCTGAACAAT
AAAAAATGATGAATATTAGACAAAAGACCATGCATATTTTTCTAAATAACTAGTCTCACAAGGC
ATAGATTCAAAACTCAAATGTGAATACTTTCTTGACCTTAGCATCAAGTCAACAACAATGCCAT
TGTTACCTTTTCACTTTTTTTGGCATACTTGTTGTACAGTATAAGTGTAATAATATGCATATTA
ATAATTTAGTAAACAGTGCCAGATCTGATGCATATTAATAAGACCTCTAGCATCATTCTTAAGC
CGTAATTATTCATAGGAGAAAGAAAGCATATTGTACATGATTAGCGATTAACCCACCACATGCA
GATTCTCAACCAATTTAGCACTATTATTTTGCATACTTAATGTGAAGTACGAAAATTGAGAGCA
GGATAATAGCAATATGAAACCAAAGCACATGCTGGTTTGATTGGAAACTAGAGGTATATAAGCA
ATAGTTCAGGACAAAAAATGCTATAAGGAAAGAATTAAAGTGTCCAATTATAACCAAATGAAAC
TAGCTGAATCTTTGAACAAAGAGAGGTTATACCTAGCTGGCGAGCTTCTTCAAGTGACAGTTCC
AAGACACGCTTTGCACGAGGCGTGAATGGGATCTCAACAGCCACAAACCCGCTACCACGTCCAA
TGATCTTCTCAACTTCCACACGGGCATCCTTAAGGTTGATACCCATAGACTTGAGAACCTTTGC
CGCGATTCCTGTGCCCTCACCGATAAGGCCCAGTAGAATTTGCTCCGTCCCAACAAAGTTGTGG
CCCAGGCGCCTCGCTTCTTCCTGTGCAAGCATGATCACCTTGATTGCCTTCTCCGTGAAGCGCT
CAAACATGGCGCGGACCACCCCTCTTGACCCCAACCCTCGGGGGCGTGAAATCTGGCTCGCGAC
AATAGAGCCGAAGTCACGCTTAATCACCGACCTCGAGTCCAGGAAATTCGTCTGCCGCAGGCCC
TGGAAACCCCCCAGGGTGAGGGTCCGTGTTGGCATGGTACGCATCATCGTGGCCCTCGCGCGCA
CGCGGAACCGCGCGGTGCCGCTCCTCCTGTATATGGTCGGAGCAATCGCGGACTGGACTAGCGA
CCCCTCCATACCGACCTACCCCAAAAGGAAAACCCCGAGCCACCTGCCCACCAATCCAATCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021