Detail information of 3_circ_ag.11


General Information
CircRNA Name 3_circ_ag.11
ID in PlantcircBase ath_circ_019809
Alias NA
Organism Arabidpsis thaliana
Position chr3: 1456534-1461453  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G05160_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 AT3G05160_circ_g.9 AT3G05160_circ_g.10 AT3G05165_circ_g.1 AT3G05165_circ_g.2 AT3G05165_circ_g.3 AT3G05165_circ_g.4 AT3G05165_circ_g.5 AT3G05165_circ_g.6 AT3G05165_circ_g.7 AT3G05165_circ_g.8 AT3G05165_circ_g.9 AT3G05165_circ_g.10 AT3G05165_circ_g.11 AT3G05165_circ_g.12 AT3G05165_circ_g.13 AT3G05165_circ_g.14
Support reads 45
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCAATTACTCGTCTTCTGCCGAGGATGACTGCCAATTGACCGCTGAACAAGGCCCCCACCGC
ACCTCCCACATTCAGAAAGGAGCCAAACGCTGAAAAttgtgccatagaaaggtctaactctttc
atgattgcagtttcagcgccggaagtataaccattctacgaaattaaatcatttgatcaattaa
gaagaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTGCCATAGAAAGGTCTAACTCTTTCATGATTGCAGTTTCAGCGCCGGAAGTATAACCATTC
TACGAAATTAAATCATTTGATCAATTAAGAAGAAATTACAGGGAAAAGATCTATATAAAAAAGA
AAGAGATTAAGACTAAAGAGATAAATAATAGGTAAACCCATTGGTCGGAAATCCGAGTGACTGT
TGCATGTATAGCTAAGATTAATCATTATCTTCAATACAATTTGATCAAAATATATGTGGTGATG
GATGGATAATGGGTGAAAAAGTCCCTTCGGGAACATCCGATAAAAATCTGTGGTGATGGCAAAA
AAGAGTAGAGAGAGAAATTAAGAAACTCACAGCACATCCATAGCTGAAGGAACTACAAACAGCA
ACAAAAGTGCTGAGGATAACACAAGCTGTGATACGACGATCATCTCTGTCGTTTTCATGCCGAA
GAAGTCCTTCTTCCATGCTTTTATTTTCCCCCGCCACCACTCTTACGCTTAATTTCTCCTCTCT
TTATATATTAATTTTCCAAAAATCTTCTAATAAACAAAAAGAAATCTTGCTGATTATAAACAGA
GGAGAGGACAAGATAGATAAAATAGAGAGAGAAAATAGATAGAGAAAAACAGAGTTTACACGTG
GGGTTCAAGCACTTATTGACTTGCACAAGTGGCCAGTGGCCTTGCTCTAGATCTTTTTTTCCTA
ACAATTATAAAAATATTTGAATCATAAGAATAAACCATCATAATGTACTTAGCCAGATATGACA
AAATCCTCAGTGCCAAAAATTTAAAACTACACATAATTTAAATGTGAGTTTCCATTAATTCTGA
GCATATTGTAGAATAGGGAACTGAATGATTCTATTAGATAGGTTAAGTACAATATAGATTACAA
GAGAGATTAAATGACAGTCCTAGCCTTTACATATCTATACTCTACACATATTACCCAAACCAAA
TACTCTAAAGAGCGATCAGTTTAATTACAAAAGTAAAATAATCGAGTGGGATTCTTTTTTGAAT
CATGGATATCGGTTCGGTTCAAATATTACCCAAAAACCGATTAGGTAAACAAGCTTTTCAAATT
CTTTGACATATACATTAGCTTTTGGGTTAGTTTGTCCAACTTCCGGTTTTTGTGAGAAGTTTGT
CCAATTTTCCTCTTGTCAAGACAATGAATGATCAATGTACACTTCCTCTTCTTTGGAGGAGAGA
ACTCTTCCTTCAAACTCCTTCTCCATGAGAGGTATCATTCCGGATTCAATTTCGAAGAATATTT
CATCATCCTAAGTACTGTTCTACAATTTTGTGTAAAGGTCTTTACAAGACCGGAAGTTATGACG
AAGCTTATCTCAATGAGAATTGAGGTTTTGGATTATGGTAAAAGTCACAATGTAAGGTGACTAT
GTCAAAGTCGTATGTTTTCATCGACATCTCTTTCGATGCTAATTCAAACTTGTATCAGTTTGAT
TATATATCCTTTTATGATTATGCTAGCTTTGTTTTGAAATCGTTTGGCATGCTTGACTTGTCCG
ATACGTCTGATCGTTGCTCTATCCTTCATTTGTTGTCTTAAACTAGGATAAATAAACCACTGAT
TTGCGAAGGAAAAAAATGTAAAATATTATTAATATCAATATGCAAATAATGTTACAAAATACAT
TTATTATTTGCAATGCGACTGACAACAGAAAATAAATTTTATCTTTTTACCAAACAAAATTAAT
AGTATATTACAATATAAATGTGCATTTAGGATGTCCCCGTAAGCGAAGCTTGTAATTCTTCCAA
TGATTGTCCTTTGGTTTCCGGTACGAGCATCCAAATAAAAATGAATGACATTCCTCCGACAGCC
GCAAATATGTAAAATGTTCCTATTTAATTATTATATATACCATAAACAATATGTAAATGACCTA
CTTGAATTTAAAAGTATATTTAACAATATATACCTAAAAATAAAAAATAAATAAACAAAAACTC
AATCATCCAATCTAAACAAGAAAACAAAAGCTAAAAGTATTTGAAGAAAACGTGAATCTAAGAG
ATATTTTCCGACCGCACATTTTGCACATCTAAAACTGTTTGATACAAATGTCAAAATTCGAACA
CGATTTTTAAATAACTTTATGTTTGATTTGTGTATTTTTATAAAGATAACTCTTAACTTTTTTT
GGTAAATTGTTTTATCCAAATTAATAAAAAAGTAATAGAGAAAATAAAGACCTTGTGCGCTCCA
TTCAAACATAAAGTTGAAAGCGTAACTCACGAACCACCCACTAGTCCATGATGTTAATGCTACA
ATTGTTCCTGCTGAAACTTTTATATTTATCGGAAAGATCTGCAACAACAACAACAACAACAGCA
AAAAACACAGTAAACTTTTTTTTTTCTTTCATAACGTCTAACTATATGATTTATATAAATTAAA
ATATGTTATTTACCTCAGACATAATGACCCAAGGTAGCCCTCCTATACCGAATGCAAAACATCC
GAAGTAGACCTAACCAAATTTAATTTAAGATTTCTTATAACAAGTTAATACCAAAAATTTAAAA
TAAAAATAAAAATTTGCATGAAAAAATGAATAAATCCTTGAAAGAAAATGAAAGATTTTACCAG
AATGTTTACGAAGACGAAAATTGGGATCAATTCAGGAAGCACATTCATTTGCTGTCTCAGAAAC
AAACAAAAAAAAAAACATATTATAAGACGAGGATTGTTTTGTCCAAAAAAAAAAGAGGCGAGGA
TTGTAATATTGATAGTTATCTCATATTAGTCCAATATAGAAATTCTACAAGAGTAACCTGTAAC
GTGAAGCTAACTCCAATAAGCAAGGATCCGATGGACATTCCAACAGCAGAAGCCTAGAATAATG
TTTATCAAGATAATGTTAATAATTATTATACTGTTATATTGTTATGTCTATATATAAACTGTAT
TTTTCTAACCAATAGGAGTGGTCGTCTTCCCCATCTATCCACAAGAATCAGACCAACCAAAGCT
TTTGGGATCTACAAAGAGTAAAAAATAATCATAATGGTATAATCGAAATAGCTTTGAGAAATTT
AATATCGTAAAAAAAAAATCAATTAGTTTAAGGTACGCACCACGAACACACCAAATATCATTGA
TCCAAGTCTCTCTGAAAAGCCTGTTTAAACGACGAAAATACAGATAACATAAATAATAGGTAGT
ATTAAATAACTCCTACGAGTATTATTTATATGAAAGCAAAATAAATTCATAAATAATAATAGTA
AGACTATGAATATCCTAACCAGCTTTTCTAAATATGGCATTTGAATAATATGTGATACCGCTAG
CTCCAGATAATTGTTGTATCAACATTAAACCAATTCCAACCTGTAAATTCAAAACAAATCATTA
CTTTCATCACTGTAAAATCAGAAGTAAATAATTAGCCTTTTCACTAAATTCCTTCCTAGTTCCT
AACTTCCTATATATGTTACCGTACCACAAGAGTTCGTCTGTACTTCTTCTGAAACATGTCAGAG
AAACTAGACTTTGAATCTTCTTCAAGCATTTTTGTCATAACCTGAAAAAGTAAAACAAGCATAT
AACTACAATTACATATAGAGAAAGTGTCCTAATAACTTAACAAAAGAAAGAAAGAATATTAATA
GTAATAATACAGTAATATATACTAATAGAGAGTGATTTCTTTTAAACATATATACCTGAATTTC
AGCTGCTTCACCTGAAACATCAGTATCTTTCCCTCTAAGTCGATGCAAAGAACTTTCTACTTCT
TTACTTAAACGGATTTTAGCCTGATAAAAACAACAACAACAAAAAATATATATAAATGACTGAA
GTAAAACGTTTACATATTTATGTCGAATTCATAGTCGAAATGATTAAAAGGAAATGCCAACCAG
CCATCTTGGAGATTCCGGTATAAAAAATATACCGATCGTTTGAAGGATGCATGGAATTGCACCT
GAACCAGAAAATAAAATTGAAACTGATCAACAAAATTCACTTGTTGATATTGAAATAATATTGT
AAACGAGGTATTTCGTTACCTATAACGGCCATAACCCGCCAATTAATTACAGTCCCAAAAAAAT
AAATCAGGGAAACTCCACTGTTTTGAAGAAGCTATAAAACCAAAAAACATTGGGTTGTTACAAT
AGAAAAAAAATATATAAGGCAATAAGGGTAACAGATTTGAATAACTTCTTAGAGAAATAAAATA
AAAGAATAGACTTTATAAAAATAAAAAATAAAAAGAGTATAATAGAGTTTACCTGGTTTGAAGC
AGTAAATGCGCCACGAACATGTTTTGGAGTGATTTCCGCAATATAGACTGGGACCTTTTATGAA
TATAAAAATGTTGGTTTTAAGAAATGTGAACTAAAACAATAAAAATGTAGATGAGATTACCAAA
TGTAATTGGTGTAAATATTTGTTCAATTACCACGTAGCTAATCAAGCCGACTCCTATGCCCAAG
GAAATTCTTCCCAAGTCCAGCCAGAAGACATTCTTTTTGTTTCCACATTTATTCAAATATATAT
ATTAGATATTTCTACGAGCAAAATTATTTTAATCGAAAAATAATTTAGGATTTCTGTGGATTTA
CACCTTTGCGAAAGCAATGGAGAGCCAGCCAAAAACGCAGAAAAAATCGCATGCCCACAACGTC
TTTAATCGTTAATAACCACCCAAAAAAAAAAGATATATATCAATCAGAATCTACGAAAATCATT
GCAAAGAAACAAGTATTAAAAATAAACAAGTGCATAATTTGATGTACTAATTACTAGTAGTATG
ATTTAAGAAATATGGTAAAATGGCAATTACTCGTCTTCTGCCGAGGATGACTGCCAATTGACCG
CTGAACAAGGCCCCCACCGCACCTCCCACATTCAGAAAGGAGCCAAACGCTGAAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.430023475
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017