Detail information of 3_circ_ag.7


General Information
CircRNA Name 3_circ_ag.7
ID in PlantcircBase ath_circ_019805
Alias NA
Organism Arabidpsis thaliana
Position chr3: 1454920-1459901  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G05160_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.8 AT3G05160_circ_g.9 AT3G05160_circ_g.10 3_circ_ag.11 AT3G05165_circ_g.1 AT3G05165_circ_g.2 AT3G05165_circ_g.3 AT3G05165_circ_g.4 AT3G05165_circ_g.5 AT3G05165_circ_g.6 AT3G05165_circ_g.7 AT3G05165_circ_g.8 AT3G05165_circ_g.9 AT3G05165_circ_g.10 AT3G05165_circ_g.11 AT3G05165_circ_g.12 AT3G05165_circ_g.13 AT3G05165_circ_g.14
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGAATATCCTAACCAGCTTTTCTAAATATGGCATTTGAATAATATGTGATACCGCTAGCTCC
AGATAATTGTTGTATCAACATTAAACCAATTCCAACctgaatttcagcggcttcatctgaaaca
tcagcatctttccctctaaggcgatgcagagagttttctacttctttaactgaaccgattttag
cctaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATTTCAGCGGCTTCATCTGAAACATCAGCATCTTTCCCTCTAAGGCGATGCAGAGAGTTT
TCTACTTCTTTAACTGAACCGATTTTAGCCTAAAAACAGTAATAAATAAATAAATTTAAAATAA
TTTAAGAAAGCTCTATATATTCATATGAAAAATTTCACAGTCGATCTGAAATATATAAAGAAAA
TACCAACCAACCATCTTGGTGATTCCGGTATGAAATATATACCGATCACTGGAATGAAACATGG
AAGAGCACCTGAACCGGAATATATACTTGAATAAAACTAACATGTAGTCTTCACAGAAGATTGA
AATAAACAAAAATGTACATGTTGAAATAAATATTATACTATTATTGAAAGAAAAAAAATGTAAA
TGGCTTGCGAGGAGATATTTCGTTACCTATAACAGCCAGAACCCGCCAATTAATTACAGTTCCG
AAAAAATAAATCAGAGAAATTCCACTGTTTTGAAGAAGCTATAAAACCAGAAATAAAAATTGGT
TGGCTACGATAAAAATGGTAAAATATAAAAATGTGATAACCAAAAATAAATAGATAAAATTTAC
CAGGGTTGAAGCAGAAAATGCGCCACGAACATGTTTAGGAGTGATTTCCGCAATATAGACAGGG
ACCTTTTGCGAATATTTAAATATTGATTTTAAGAAATGTGAAATAAGATGAAAATGAAATTATG
TATTAATTATAGATAACTTTAAATTACCACGTAGCTAGTCAAGCCCACTCCGATGCCTAAAGAA
ATTCTTCCCAAGTCCAGCCACAAGACATTCTTTTCGTTTCCACATAAATCATGTCTATGTATTA
GATATATTGACAATTTTTATAGAAAATAATTAATCGAGTTTTGGGATTCACACCTTTGCAAAAG
CAATGGAGAGCCAACCAAAAATGCAGAACAAATCGCATGCCCACAACGTCTTTAATTGTTATTC
ATAATAAAAAAATAAAGAAAATTTATTAGAATTTAGTACTAAGAAAATAATTTTGAAAGAAACT
AGTGTATAATTCTCTATGTAATAGTAATTACTAATTTACTAGTATGATTAAGAAATAGGGTAAA
ATGGTAATACTCGTCTTCTGCCAAGGATGACTGCTAATTGACCGCTAAACAAAGCTCCCACCGC
ACCTCCCAAGTTCAAAAAGGAACCAAACGCTGAAAACTGGAAAAAAAAATATATATGAAAATTT
GTGAAGCACACTTACTTCATCAAAATGCTAAGTTGTTCCTGACAAAATGCAATGCTAAATATAG
TATTTTCTCTCAATGTAGTGTGTACTTGCATGTGTCTCTTAATATATTTTTCCAAGCCATTTTT
TTCTACTCATAACTCATAAGAAGTAGTCATAACTGTTGGACCACAAGAAACAACTAGATACAGA
AGAACCTATTATCTCCAGTTGCGAAAGCTATATCTTATTTATCATTGATGTCTTTATACGTAAC
TACATACTATAGATTATCAATTTCATTTTCTTCATATCGACCTGGCTTGTGTGTTAAGAGTCTG
ATCAATTAGGATTAAAGGGTATTTAAATATTTATTACAAAAGCTAAATTGAAAAAGAAAGAAAA
AACAAAGTACATACTTGTGCCATAGAAAGGTCTAACTCTTTCATGATTGCAGTTTCAGCGCCGG
AAGTATAACCATTCTACGAAATTAAATCATTTGATCAATTAAGAAGAAATTACAGGGAAAAGAT
CTATATAAAAAAGAAAGAGATTAAGACTAAAGAGATAAATAATAGGTAAACCCATTGGTCGGAA
ATCCGAGTGACTGTTGCATGTATAGCTAAGATTAATCATTATCTTCAATACAATTTGATCAAAA
TATATGTGGTGATGGATGGATAATGGGTGAAAAAGTCCCTTCGGGAACATCCGATAAAAATCTG
TGGTGATGGCAAAAAAGAGTAGAGAGAGAAATTAAGAAACTCACAGCACATCCATAGCTGAAGG
AACTACAAACAGCAACAAAAGTGCTGAGGATAACACAAGCTGTGATACGACGATCATCTCTGTC
GTTTTCATGCCGAAGAAGTCCTTCTTCCATGCTTTTATTTTCCCCCGCCACCACTCTTACGCTT
AATTTCTCCTCTCTTTATATATTAATTTTCCAAAAATCTTCTAATAAACAAAAAGAAATCTTGC
TGATTATAAACAGAGGAGAGGACAAGATAGATAAAATAGAGAGAGAAAATAGATAGAGAAAAAC
AGAGTTTACACGTGGGGTTCAAGCACTTATTGACTTGCACAAGTGGCCAGTGGCCTTGCTCTAG
ATCTTTTTTTCCTAACAATTATAAAAATATTTGAATCATAAGAATAAACCATCATAATGTACTT
AGCCAGATATGACAAAATCCTCAGTGCCAAAAATTTAAAACTACACATAATTTAAATGTGAGTT
TCCATTAATTCTGAGCATATTGTAGAATAGGGAACTGAATGATTCTATTAGATAGGTTAAGTAC
AATATAGATTACAAGAGAGATTAAATGACAGTCCTAGCCTTTACATATCTATACTCTACACATA
TTACCCAAACCAAATACTCTAAAGAGCGATCAGTTTAATTACAAAAGTAAAATAATCGAGTGGG
ATTCTTTTTTGAATCATGGATATCGGTTCGGTTCAAATATTACCCAAAAACCGATTAGGTAAAC
AAGCTTTTCAAATTCTTTGACATATACATTAGCTTTTGGGTTAGTTTGTCCAACTTCCGGTTTT
TGTGAGAAGTTTGTCCAATTTTCCTCTTGTCAAGACAATGAATGATCAATGTACACTTCCTCTT
CTTTGGAGGAGAGAACTCTTCCTTCAAACTCCTTCTCCATGAGAGGTATCATTCCGGATTCAAT
TTCGAAGAATATTTCATCATCCTAAGTACTGTTCTACAATTTTGTGTAAAGGTCTTTACAAGAC
CGGAAGTTATGACGAAGCTTATCTCAATGAGAATTGAGGTTTTGGATTATGGTAAAAGTCACAA
TGTAAGGTGACTATGTCAAAGTCGTATGTTTTCATCGACATCTCTTTCGATGCTAATTCAAACT
TGTATCAGTTTGATTATATATCCTTTTATGATTATGCTAGCTTTGTTTTGAAATCGTTTGGCAT
GCTTGACTTGTCCGATACGTCTGATCGTTGCTCTATCCTTCATTTGTTGTCTTAAACTAGGATA
AATAAACCACTGATTTGCGAAGGAAAAAAATGTAAAATATTATTAATATCAATATGCAAATAAT
GTTACAAAATACATTTATTATTTGCAATGCGACTGACAACAGAAAATAAATTTTATCTTTTTAC
CAAACAAAATTAATAGTATATTACAATATAAATGTGCATTTAGGATGTCCCCGTAAGCGAAGCT
TGTAATTCTTCCAATGATTGTCCTTTGGTTTCCGGTACGAGCATCCAAATAAAAATGAATGACA
TTCCTCCGACAGCCGCAAATATGTAAAATGTTCCTATTTAATTATTATATATACCATAAACAAT
ATGTAAATGACCTACTTGAATTTAAAAGTATATTTAACAATATATACCTAAAAATAAAAAATAA
ATAAACAAAAACTCAATCATCCAATCTAAACAAGAAAACAAAAGCTAAAAGTATTTGAAGAAAA
CGTGAATCTAAGAGATATTTTCCGACCGCACATTTTGCACATCTAAAACTGTTTGATACAAATG
TCAAAATTCGAACACGATTTTTAAATAACTTTATGTTTGATTTGTGTATTTTTATAAAGATAAC
TCTTAACTTTTTTTGGTAAATTGTTTTATCCAAATTAATAAAAAAGTAATAGAGAAAATAAAGA
CCTTGTGCGCTCCATTCAAACATAAAGTTGAAAGCGTAACTCACGAACCACCCACTAGTCCATG
ATGTTAATGCTACAATTGTTCCTGCTGAAACTTTTATATTTATCGGAAAGATCTGCAACAACAA
CAACAACAACAGCAAAAAACACAGTAAACTTTTTTTTTTCTTTCATAACGTCTAACTATATGAT
TTATATAAATTAAAATATGTTATTTACCTCAGACATAATGACCCAAGGTAGCCCTCCTATACCG
AATGCAAAACATCCGAAGTAGACCTAACCAAATTTAATTTAAGATTTCTTATAACAAGTTAATA
CCAAAAATTTAAAATAAAAATAAAAATTTGCATGAAAAAATGAATAAATCCTTGAAAGAAAATG
AAAGATTTTACCAGAATGTTTACGAAGACGAAAATTGGGATCAATTCAGGAAGCACATTCATTT
GCTGTCTCAGAAACAAACAAAAAAAAAAACATATTATAAGACGAGGATTGTTTTGTCCAAAAAA
AAAAGAGGCGAGGATTGTAATATTGATAGTTATCTCATATTAGTCCAATATAGAAATTCTACAA
GAGTAACCTGTAACGTGAAGCTAACTCCAATAAGCAAGGATCCGATGGACATTCCAACAGCAGA
AGCCTAGAATAATGTTTATCAAGATAATGTTAATAATTATTATACTGTTATATTGTTATGTCTA
TATATAAACTGTATTTTTCTAACCAATAGGAGTGGTCGTCTTCCCCATCTATCCACAAGAATCA
GACCAACCAAAGCTTTTGGGATCTACAAAGAGTAAAAAATAATCATAATGGTATAATCGAAATA
GCTTTGAGAAATTTAATATCGTAAAAAAAAAATCAATTAGTTTAAGGTACGCACCACGAACACA
CCAAATATCATTGATCCAAGTCTCTCTGAAAAGCCTGTTTAAACGACGAAAATACAGATAACAT
AAATAATAGGTAGTATTAAATAACTCCTACGAGTATTATTTATATGAAAGCAAAATAAATTCAT
AAATAATAATAGTAAGACTATGAATATCCTAACCAGCTTTTCTAAATATGGCATTTGAATAATA
TGTGATACCGCTAGCTCCAGATAATTGTTGTATCAACATTAAACCAATTCCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.343370417
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017