Detail information of 3_circ_ag.4


General Information
CircRNA Name 3_circ_ag.4
ID in PlantcircBase ath_circ_019795
Alias NA
Organism Arabidpsis thaliana
Position chr3: 1453523-1458408  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G05160_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 AT3G05160_circ_g.9 AT3G05160_circ_g.10 3_circ_ag.11 AT3G05165_circ_g.1 AT3G05165_circ_g.2 AT3G05165_circ_g.3 AT3G05165_circ_g.4 AT3G05165_circ_g.5 AT3G05165_circ_g.6 AT3G05165_circ_g.7 AT3G05165_circ_g.8 AT3G05165_circ_g.9 AT3G05165_circ_g.10 AT3G05165_circ_g.11 AT3G05165_circ_g.12 AT3G05165_circ_g.13 AT3G05165_circ_g.14
Support reads 108
Tissues root, aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTGTAATTCTTCCAATGATTGTCCTTTGGTTTCCGGTACGAGCATCCAAATAAAAATGAATG
ACATTCCTCCGACAGCCGCAAATATGTAAAATGTTCcttgtgcgctccattcaaacataaagtt
gaaaccataactaacgaaccacccagtggtccacgatgttaatgcaacgattgaccctgctgaa
acttttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTGCGCTCCATTCAAACATAAAGTTGAAACCATAACTAACGAACCACCCAGTGGTCCACGA
TGTTAATGCAACGATTGACCCTGCTGAAACTTTTATATTTATCGGAAATATCTGAAACAACAAA
AAGACACAAAATAAACCTTTCTTTTCTTTGATAAATATTTGGTTATTGGATTTTCTTTTCTTTG
AATATAAGTTATTAACCTCAGACATAATGATCCAAGGTAGCCCTCCTATACCGATTGCAAAAAA
TCCAAAGTAGACCTAGCCAGAATAGTCGAATTACGTTCAGTTTTGTTATTACAATTTAATAACG
AAAAATATAATTTGAAAAAATGAATGCTTTTTACCAGAATATTTATGAAGACGAAAACTGGAAT
AAATTCAGGAAACAGATTCATTTCCTGTTCATCCCCACACACAAAAAAAAATCATATAGATTTA
ATTGTAATATTATAAGTGCTAATAGTTATCTTATATTAGTCCAATATTAGGAAACAAGAGTAAC
CTGTAACGTGAAGCTAACCCCAATAAGCAAGGATCCGATAGACATTCCAACAGCAGAAGCCTAG
AATAATGTTTATCAAGATAATGTTAATAATTATTATACTGTTATATTGTTATGTCTATATATAA
ACTGTATTTTTCTAACCAATAGGAGTGGTCGTCTTCCCCATCTATCCACAAGAATCAGACCAAC
CAAAGCTTTTGGGATCTACAAAGAGTAAAAAATAATCATAATGGTATAATCGAAATAGCTTTGA
GAAATTTAATATCGTAAAAAAAAAATCAATTAGTTAAAGGTACGCACCACGAACACACCAAATA
TCATTGATCCAAGTCTCTCTGAAAAGCCTGTTTAAACGACGAAAATGCAGATAACATAAATAAT
AGGTAGTATTAAATAACTCCTACGAGTATTATTTATATGAAAGCAAAATAAATTCATAAATAAT
AATAGTAAGACTATGAATATCCTAACCAGCTTTTCTAAATATGGCATTTGAATAATATGTGATA
CCGCTAGCTCCAGATAATTGTTGTATCAACATTAAACCAATTCCAACCTGTACATAAAAAAATG
AAAAGGTATGATTTTATAAATAAATCATTACTTTCACCAACAGTAAAATCATCAATAACTAGCC
TTTTCACTTTATATTTCTCTATATGTGAATTACCGTACCACTAGAGTTCGTCTATACTTCTTCT
GAAACATGTCACAAAAACTGGACTTTGAATCTTCTTCAAGCATTTTTGTCATAACCTAAACATA
AGTTTACCAAACATGTAACTAGACCAAAAACTTCAAGATTCTATATATAAAAAAAAAAATTATT
TATAAAGAAAGTATACTAATAATATTTAAATTGCTAATGTTTATAAAATATACCTGAATTTCAG
CGGCTTCATCTGAAACATCAGCATCTTTCCCTCTAAGGCGATGCAGAGAGTTTTCTACTTCTTT
AACTGAACCGATTTTAGCCTAAAAACAGTAATAAATAAATAAATTTAAAATAATTTAAGAAAGC
TCTATATATTCATATGAAAAATTTCACAGTCGATCTGAAATATATAAAGAAAATACCAACCAAC
CATCTTGGTGATTCCGGTATGAAATATATACCGATCACTGGAATGAAACATGGAAGAGCACCTG
AACCGGAATATATACTTGAATAAAACTAACATGTAGTCTTCACAGAAGATTGAAATAAACAAAA
ATGTACATGTTGAAATAAATATTATACTATTATTGAAAGAAAAAAAATGTAAATGGCTTGCGAG
GAGATATTTCGTTACCTATAACAGCCAGAACCCGCCAATTAATTACAGTTCCGAAAAAATAAAT
CAGAGAAATTCCACTGTTTTGAAGAAGCTATAAAACCAGAAATAAAAATTGGTTGGCTACGATA
AAAATGGTAAAATATAAAAATGTGATAACCAAAAATAAATAGATAAAATTTACCAGGGTTGAAG
CAGAAAATGCGCCACGAACATGTTTAGGAGTGATTTCCGCAATATAGACAGGGACCTTTTGCGA
ATATTTAAATATTGATTTTAAGAAATGTGAAATAAGATGAAAATGAAATTATGTATTAATTATA
GATAACTTTAAATTACCACGTAGCTAGTCAAGCCCACTCCGATGCCTAAAGAAATTCTTCCCAA
GTCCAGCCACAAGACATTCTTTTCGTTTCCACATAAATCATGTCTATGTATTAGATATATTGAC
AATTTTTATAGAAAATAATTAATCGAGTTTTGGGATTCACACCTTTGCAAAAGCAATGGAGAGC
CAACCAAAAATGCAGAACAAATCGCATGCCCACAACGTCTTTAATTGTTATTCATAATAAAAAA
ATAAAGAAAATTTATTAGAATTTAGTACTAAGAAAATAATTTTGAAAGAAACTAGTGTATAATT
CTCTATGTAATAGTAATTACTAATTTACTAGTATGATTAAGAAATAGGGTAAAATGGTAATACT
CGTCTTCTGCCAAGGATGACTGCTAATTGACCGCTAAACAAAGCTCCCACCGCACCTCCCAAGT
TCAAAAAGGAACCAAACGCTGAAAACTGGAAAAAAAAATATATATGAAAATTTGTGAAGCACAC
TTACTTCATCAAAATGCTAAGTTGTTCCTGACAAAATGCAATGCTAAATATAGTATTTTCTCTC
AATGTAGTGTGTACTTGCATGTGTCTCTTAATATATTTTTCCAAGCCATTTTTTTCTACTCATA
ACTCATAAGAAGTAGTCATAACTGTTGGACCACAAGAAACAACTAGATACAGAAGAACCTATTA
TCTCCAGTTGCGAAAGCTATATCTTATTTATCATTGATGTCTTTATACGTAACTACATACTATA
GATTATCAATTTCATTTTCTTCATATCGACCTGGCTTGTGTGTTAAGAGTCTGATCAATTAGGA
TTAAAGGGTATTTAAATATTTATTACAAAAGCTAAATTGAAAAAGAAAGAAAAAACAAAGTACA
TACTTGTGCCATAGAAAGGTCTAACTCTTTCATGATTGCAGTTTCAGCGCCGGAAGTATAACCA
TTCTACGAAATTAAATCATTTGATCAATTAAGAAGAAATTACAGGGAAAAGATCTATATAAAAA
AGAAAGAGATTAAGACTAAAGAGATAAATAATAGGTAAACCCATTGGTCGGAAATCCGAGTGAC
TGTTGCATGTATAGCTAAGATTAATCATTATCTTCAATACAATTTGATCAAAATATATGTGGTG
ATGGATGGATAATGGGTGAAAAAGTCCCTTCGGGAACATCCGATAAAAATCTGTGGTGATGGCA
AAAAAGAGTAGAGAGAGAAATTAAGAAACTCACAGCACATCCATAGCTGAAGGAACTACAAACA
GCAACAAAAGTGCTGAGGATAACACAAGCTGTGATACGACGATCATCTCTGTCGTTTTCATGCC
GAAGAAGTCCTTCTTCCATGCTTTTATTTTCCCCCGCCACCACTCTTACGCTTAATTTCTCCTC
TCTTTATATATTAATTTTCCAAAAATCTTCTAATAAACAAAAAGAAATCTTGCTGATTATAAAC
AGAGGAGAGGACAAGATAGATAAAATAGAGAGAGAAAATAGATAGAGAAAAACAGAGTTTACAC
GTGGGGTTCAAGCACTTATTGACTTGCACAAGTGGCCAGTGGCCTTGCTCTAGATCTTTTTTTC
CTAACAATTATAAAAATATTTGAATCATAAGAATAAACCATCATAATGTACTTAGCCAGATATG
ACAAAATCCTCAGTGCCAAAAATTTAAAACTACACATAATTTAAATGTGAGTTTCCATTAATTC
TGAGCATATTGTAGAATAGGGAACTGAATGATTCTATTAGATAGGTTAAGTACAATATAGATTA
CAAGAGAGATTAAATGACAGTCCTAGCCTTTACATATCTATACTCTACACATATTACCCAAACC
AAATACTCTAAAGAGCGATCAGTTTAATTACAAAAGTAAAATAATCGAGTGGGATTCTTTTTTG
AATCATGGATATCGGTTCGGTTCAAATATTACCCAAAAACCGATTAGGTAAACAAGCTTTTCAA
ATTCTTTGACATATACATTAGCTTTTGGGTTAGTTTGTCCAACTTCCGGTTTTTGTGAGAAGTT
TGTCCAATTTTCCTCTTGTCAAGACAATGAATGATCAATGTACACTTCCTCTTCTTTGGAGGAG
AGAACTCTTCCTTCAAACTCCTTCTCCATGAGAGGTATCATTCCGGATTCAATTTCGAAGAATA
TTTCATCATCCTAAGTACTGTTCTACAATTTTGTGTAAAGGTCTTTACAAGACCGGAAGTTATG
ACGAAGCTTATCTCAATGAGAATTGAGGTTTTGGATTATGGTAAAAGTCACAATGTAAGGTGAC
TATGTCAAAGTCGTATGTTTTCATCGACATCTCTTTCGATGCTAATTCAAACTTGTATCAGTTT
GATTATATATCCTTTTATGATTATGCTAGCTTTGTTTTGAAATCGTTTGGCATGCTTGACTTGT
CCGATACGTCTGATCGTTGCTCTATCCTTCATTTGTTGTCTTAAACTAGGATAAATAAACCACT
GATTTGCGAAGGAAAAAAATGTAAAATATTATTAATATCAATATGCAAATAATGTTACAAAATA
CATTTATTATTTGCAATGCGACTGACAACAGAAAATAAATTTTATCTTTTTACCAAACAAAATT
AATAGTATATTACAATATAAATGTGCATTTAGGATGTCCCCGTAAGCGAAGCTTGTAATTCTTC
CAATGATTGTCCTTTGGTTTCCGGTACGAGCATCCAAATAAAAATGAATGACATTCCTCCGACA
GCCGCAAATATGTAAAATGTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.636654966
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017