Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G05165_circ_g.6 |
ID in PlantcircBase | ath_circ_019815 |
Alias | 3:1460810-1461204 |
Organism | Arabidpsis thaliana |
Position | chr3: 1460810-1461204 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT3G05165 |
Parent gene annotation |
Major facilitator superfamily protein |
Parent gene strand | - |
Alternative splicing | 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G05160_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 AT3G05160_circ_g.9 AT3G05160_circ_g.10 3_circ_ag.11 AT3G05165_circ_g.1 AT3G05165_circ_g.2 AT3G05165_circ_g.3 AT3G05165_circ_g.4 AT3G05165_circ_g.5 AT3G05165_circ_g.7 AT3G05165_circ_g.8 AT3G05165_circ_g.9 AT3G05165_circ_g.10 AT3G05165_circ_g.11 AT3G05165_circ_g.12 AT3G05165_circ_g.13 AT3G05165_circ_g.14 |
Support reads | 1/1/1 |
Tissues | root;leaf;flower |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G05165.2:3 AT3G05165.5:3 AT3G05165.3:3 AT3G05165.4:3 AT3G05165.6:3 AT3G05165.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.197954937 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |