Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G05160_circ_g.9 |
ID in PlantcircBase | ath_circ_019807 |
Alias | 3:1455330-1456596 |
Organism | Arabidpsis thaliana |
Position | chr3: 1455330-1456596 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT3G05160 |
Parent gene annotation |
Sugar transporter ERD6-like 10 |
Parent gene strand | - |
Alternative splicing | 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G05160_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 AT3G05160_circ_g.10 3_circ_ag.11 AT3G05165_circ_g.1 AT3G05165_circ_g.2 AT3G05165_circ_g.3 AT3G05165_circ_g.4 AT3G05165_circ_g.5 AT3G05165_circ_g.6 AT3G05165_circ_g.7 AT3G05165_circ_g.8 AT3G05165_circ_g.9 AT3G05165_circ_g.10 AT3G05165_circ_g.11 AT3G05165_circ_g.12 AT3G05165_circ_g.13 AT3G05165_circ_g.14 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G05160.2:6 AT3G05160.1:6 AT3G05160.3:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.1084319 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |