Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G05165_circ_g.9 |
ID in PlantcircBase | ath_circ_019818 |
Alias | AT3G05165_C1 |
Organism | Arabidpsis thaliana |
Position | chr3: 1461364-1462783 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, CIRI2 |
Parent gene | AT3G05165 |
Parent gene annotation |
Major facilitator superfamily protein |
Parent gene strand | - |
Alternative splicing | 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G05160_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 3_circ_ag.8 AT3G05160_circ_g.9 AT3G05160_circ_g.10 3_circ_ag.11 AT3G05165_circ_g.1 AT3G05165_circ_g.2 AT3G05165_circ_g.3 AT3G05165_circ_g.4 AT3G05165_circ_g.5 AT3G05165_circ_g.6 AT3G05165_circ_g.7 AT3G05165_circ_g.8 AT3G05165_circ_g.10 AT3G05165_circ_g.11 AT3G05165_circ_g.12 AT3G05165_circ_g.13 AT3G05165_circ_g.14 |
Support reads | 4 |
Tissues | root, whole_plant, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G05165.6:3 AT3G05165.2:3 AT3G05165.4:3 AT3G05165.5:3 AT3G05165.1:3 AT3G05165.3:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.232454877 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Chu et al., 2017;Zhang et al., 2019 |